Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,672,442 – 13,672,547 |
Length | 105 |
Max. P | 0.641491 |
Location | 13,672,442 – 13,672,547 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 85.73 |
Mean single sequence MFE | -38.73 |
Consensus MFE | -28.47 |
Energy contribution | -28.83 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.15 |
Mean z-score | -2.68 |
Structure conservation index | 0.73 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.641491 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13672442 105 - 22407834 ACCCGGCUGCACUUCUUUUGACUCGC---UGUCGAUUGGAGUGCAGU--UGGGCCAACGAGUUGCUCGAGAGUUUCACGGCAAAUGGGCUUGGGUUUUUGGUUUCGGGUU .((((((((((((((..(((((....---.)))))..))))))))))--))))(((((.((..(((((((.((((......))))...)))))))..)).)))..))... ( -45.30) >DroSec_CAF1 28789 104 - 1 AC-CGGCUGCACUUCUUUUGACUCGC---UGUCGAUUGGAGUGCAGU--UGGGCCAACGAGUUGCUCGAGAGUUUCACGGCAAAUGGGCUUGGGUUUUUGGUUUUGGGUG .(-((((((((((((..(((((....---.)))))..))))))))))--)))((((((.((..(((((((.((((......))))...)))))))..)).)))...))). ( -44.10) >DroSim_CAF1 28687 104 - 1 AC-CGGCUGCACUUCUUUUGACUCGC---UGUCGAUUGGAGUGCAGU--UGGGCCAACGAGUUGCUCGAGAGUUUCACGGCAAAUGGGCUUGGGUUUUUGGUUUUGGGNN .(-((((((((((((..(((((....---.)))))..))))))))))--))).(((((.((..(((((((.((((......))))...)))))))..)).))..)))... ( -43.60) >DroEre_CAF1 28498 104 - 1 AC-GGGCUGCACUUCUUUUGACUCGC---UGUCGAUUGGAGUGCAGU--UGGGCCAACGAGUUGCUCGAGAGUUUCACGGCAAAUGGGCUUGGGUUUUUGGUUUUUGGUU .(-.(((((((((((..(((((....---.)))))..))))))))))--).)((((((.((..(((((((.((((......))))...)))))))..)).))...)))). ( -40.50) >DroYak_CAF1 28697 98 - 1 AC-GGGCUGCACUUCUUUUGACUCGC---UGUCGAUUGGAGUGCAGU--UGGUCCAACGAGUUCCUCGAGAGUUUCACGGCAAAUGGGCUUGGGUUUUUGGUUU------ ((-.(((((((((((..(((((....---.)))))..))))))))))--).))....((((..((.((((.((((......))))...))))))..))))....------ ( -35.60) >DroAna_CAF1 30942 94 - 1 AU-GGGCUGCACCUCGUUUGACUCGCUGCUGUCGAUUGGAGUGGCGUUUUUGGCUAACGAGUUGCUCGAGAGUUUCAUGGUAAGUGAGUUUUGGC--------------- ..-.....(((.((((((.((..(((..((.(.....).))..)))..)).....)))))).)))((((((..(((((.....))))))))))).--------------- ( -23.30) >consensus AC_CGGCUGCACUUCUUUUGACUCGC___UGUCGAUUGGAGUGCAGU__UGGGCCAACGAGUUGCUCGAGAGUUUCACGGCAAAUGGGCUUGGGUUUUUGGUUUUGGG__ .....((((((((((..(((((........)))))..))))))))))...(((((......((((.((.(.....).))))))...)))))................... (-28.47 = -28.83 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:25 2006