Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,394,942 – 1,395,047 |
Length | 105 |
Max. P | 0.765699 |
Location | 1,394,942 – 1,395,047 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 86.91 |
Mean single sequence MFE | -25.92 |
Consensus MFE | -21.74 |
Energy contribution | -21.34 |
Covariance contribution | -0.40 |
Combinations/Pair | 1.11 |
Mean z-score | -1.63 |
Structure conservation index | 0.84 |
SVM decision value | 0.51 |
SVM RNA-class probability | 0.765699 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1394942 105 + 22407834 --ACCCACCUGACCCUCCGGCUCCCCCUCGCGAUCCUGCUGCUGCUACUACCUGCUACUACCUCAAUAUGCCAAUAAAAGCUUGGUAAUGAUAGCCGGACUCAGGGU --.....(((((...(((((((.......(((.....((....)).......))).............((((((.......)))))).....))))))).))))).. ( -26.90) >DroSec_CAF1 13322 95 + 1 --GCCCACCUGACCCUCCGGCUCCCCCCCGCGAUCCUGCUGCUGCUA----------CUACCUCAAUAUGCCAAUAAAAGCUUGGUAAUGAUAGCCGGACUCAGGGU --.....(((((...(((((((.......(((....)))........----------...........((((((.......)))))).....))))))).))))).. ( -25.70) >DroSim_CAF1 13506 95 + 1 --ACCCACCUGACCCUCCGGCUCCCCCUCGCGAUCCUGCUGCUGCUA----------CUACCUCAAUAUGCCAAUAAAAGCUUGGUAAUGAUAGCCGGACUCAGGGU --.....(((((...(((((((.......(((....)))........----------...........((((((.......)))))).....))))))).))))).. ( -25.70) >DroEre_CAF1 13381 96 + 1 CGACCCACCUG-CCCUCCGGCUCCUCCUCGCGAUCCCGCUGCUGCUGC----------CACCUCAAUAUGCCAAUAAAAGCUUGGUAAUGAUAGCCGGACUCCAGGU ......(((((-...(((((((.......(((....))).((....))----------..........((((((.......)))))).....)))))))...))))) ( -27.10) >DroYak_CAF1 13310 103 + 1 CUAUCCACCUGACCCUCUGGCUCCAUCUCCCGAUCCCGCUGCUGCUGCA----CCUACUACCUCAAUAUGCCAAUAAAAGCUUGGUAAUGAUAGCCGGACUCCAGGU ......(((((....(((((((..(((..........(.(((....)))----.).............((((((.......))))))..))))))))))...))))) ( -24.20) >consensus __ACCCACCUGACCCUCCGGCUCCCCCUCGCGAUCCUGCUGCUGCUAC_________CUACCUCAAUAUGCCAAUAAAAGCUUGGUAAUGAUAGCCGGACUCAGGGU ......((((.....(((((((...............((....)).......................((((((.......)))))).....)))))))....)))) (-21.74 = -21.34 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:07 2006