Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,665,520 – 13,665,619 |
Length | 99 |
Max. P | 0.998304 |
Location | 13,665,520 – 13,665,619 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 69.91 |
Mean single sequence MFE | -28.86 |
Consensus MFE | -18.18 |
Energy contribution | -17.74 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.25 |
Mean z-score | -2.47 |
Structure conservation index | 0.63 |
SVM decision value | 3.06 |
SVM RNA-class probability | 0.998304 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13665520 99 + 22407834 CAGCG-GCAGUUCGACGUGAACUCGCGAGCGGCCAACACGUAAGCGGCGCGUUGUGCAGCUGUUUAAAAAACUCGGCAGCAAAAUAACAAA-AAAA-AAA-AU ..(((-((.(((((.((......))))))).)))....((....))..))(((((...(((((..(......)..)))))...)))))...-....-...-.. ( -28.20) >DroVir_CAF1 29346 75 + 1 CCGCG-GCAGUGUGACGAGAACGCGUGAGCAGCCAACACGUAAACGACGCGUUGUGCGCUGC-GCCAACAA-----------UAAAAA--------------- .((((-((..............((....)).((((((.(((.....))).)))).)))))))-).......-----------......--------------- ( -25.80) >DroGri_CAF1 35296 87 + 1 CCGCGCGCAGUGUGACGAGAACGCGUGAGCGGCCAACACGUAAGCAACGCGUUGUGCGGUGC-GCUAAAGC-----------UGAAAUCAGUUUAAAAA---- ..((((((.(((..(((.(..(((....)))..)....(((.....))))))..))).))))-))..((((-----------((....)))))).....---- ( -33.90) >DroSec_CAF1 21932 101 + 1 CAGCG-GCAGUUCGACGUGAACUCGCGAGCGGCCAACACGUAAGCGGCGCGUUGUGCAGCUGUUUAAAAAACUCGGCAGCAAAAUAACAAA-AAAAAAAAAAA ..(((-((.(((((.((......))))))).)))....((....))..))(((((...(((((..(......)..)))))...)))))...-........... ( -28.20) >DroSim_CAF1 21752 100 + 1 CAGCG-GCAGUUCGACGUGAACUCGCGAGCGGCCAACACGUAAGCGGCGCGUUGUGCAGCUGUUUAAAAAACUCGGCAGCAGAAUAACAAA-AAAA-AAAACA ..(((-((.(((((.((......))))))).)))....((....))..))(((((...(((((..(......)..)))))...)))))...-....-...... ( -28.20) >consensus CAGCG_GCAGUUCGACGUGAACUCGCGAGCGGCCAACACGUAAGCGGCGCGUUGUGCAGCUGUUUAAAAAACUCGGCAGCA_AAUAACAAA_AAAA_AAA___ ((((.....(((((.((......))))))).((((((.(((.....))).)))).)).))))......................................... (-18.18 = -17.74 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:23 2006