Locus 4786

Sequence ID 2L_DroMel_CAF1
Location 13,660,405 – 13,660,496
Length 91
Max. P 0.546195
window7577

overview

Window 7

Location 13,660,405 – 13,660,496
Length 91
Sequences 5
Columns 94
Reading direction reverse
Mean pairwise identity 84.98
Mean single sequence MFE -13.51
Consensus MFE -8.30
Energy contribution -9.30
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -2.03
Structure conservation index 0.61
SVM decision value 0.03
SVM RNA-class probability 0.546195
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13660405 91 - 22407834
AAAA-AAAGUAGCGACAUGGAACGAAGAAA-AAUAUGAAAAAGUACCAAGA-ACUUGCUGCAUUUCCAUAACAAAACUUUUGCGUUAAAAACAG
....-...((((((((.(((.((.......-...........)).))).).-..)))))))................................. ( -10.37)
>DroSec_CAF1 16833 92 - 1
AAAAAAAAGUAGCGACAUGAAGCGAAGAAA-AAUAUGAAAAAGUACCAAGA-ACUUGCUGCAUUUCCAUAACAAAACUUUUGCGUUAAAAACAG
....((((((.((........)).......-..((((.(((.(((.(((..-..))).))).))).)))).....))))))............. ( -11.00)
>DroEre_CAF1 16124 90 - 1
-AAA-AAAGUAGUGACAUGGAACGAAGAAA-AAUAUGAAAAAGUAGCAAGA-ACUUGCUGCGUUUCCAUAACAAAACUUUUGCGUUAAAAACAG
-..(-(((((..((..(((((((.......-....(....).(((((((..-..)))))))).))))))..))..))))))............. ( -19.00)
>DroYak_CAF1 16408 90 - 1
-AAA-AAAGUAGUGACAUGGAACGAAGAAA-AAUAUGAAAAAGUAGCAAGA-ACUUGCUGCAUUUCCAUAACAAAAGUUUUGCGUUAAAAACAG
-...-...((..((((..(((((.......-..((((.(((.(((((((..-..))))))).))).))))......)))))..))))...)).. ( -17.76)
>DroAna_CAF1 17846 78 - 1
-UAA-AAAG-------------CAAAGAAACUAUAUGAA-AAGUAGCAAGAAACUUGCAGAAUUUCCAUAACGAAACUUUCUCGCUAAAAACAA
-...-..((-------------(..(((((.........-.....(((((...)))))....((((......)))).))))).)))........ (  -9.40)
>consensus
_AAA_AAAGUAGCGACAUGGAACGAAGAAA_AAUAUGAAAAAGUAGCAAGA_ACUUGCUGCAUUUCCAUAACAAAACUUUUGCGUUAAAAACAG
.................................((((.(((.((((((((...)))))))).))).))))........................ ( -8.30 =  -9.30 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:21 2006