Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,660,237 – 13,660,353 |
Length | 116 |
Max. P | 0.548650 |
Location | 13,660,237 – 13,660,353 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 88.84 |
Mean single sequence MFE | -19.15 |
Consensus MFE | -13.41 |
Energy contribution | -15.47 |
Covariance contribution | 2.06 |
Combinations/Pair | 1.04 |
Mean z-score | -1.63 |
Structure conservation index | 0.70 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.548650 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13660237 116 - 22407834 AAAA-AAAAGUAAACACAGUCUGAAAGUAGCCAACUAAACUUUUAUUAAAAUUGUAAAUAUUUAUCAACAUUCAUAAACCAGAGCUACCACAGCAAAUGUGGUUGUAUGCUGCUGCA ....-.....................(((((....((((..(((((.......)))))..))))..................(((.((((((.....)))))).....)))))))). ( -18.60) >DroSec_CAF1 16664 117 - 1 AAAAAAAAAGUAAACACAGUCUGAAAGUAGCCAACUAAACUUUUAUUAAAAUUGUAAAUAUUUAUCAACAUUCAUAAACCAGAGCUACCGCAGCAAAUGUGGUUGUGUGGUGCUGCA ..........................(((((....((((..(((((.......)))))..)))).............((((..((.((((((.....)))))).)).))))))))). ( -22.60) >DroEre_CAF1 15958 114 - 1 ACAAAAA---AAAUCACAGUCUGAAAGUAGCCAACUAAACUUUUAUUAAAAUUGUAAAUAUUUAUCAACAUUCAUAAACCACGGCUACCACAGGAAAUGUGGCUGUAUGGUGCUGCA .......---................(((((....((((..(((((.......)))))..)))).............((((..((..(((((.....)))))..)).))))))))). ( -20.80) >DroYak_CAF1 16251 105 - 1 AAAAA-A---UAAACACAGUCUGAAAGUAGCCAACUAAACUUUUAUUAAAAUUGUAAAUAUUUAUCAACAUUCAUAAACCACGGCUACCACACAAAAUGUGGUUGUAUG-------- .....-(---(((.((((...((...((((((.........(((((.......)))))..(((((........)))))....))))))....))...)))).))))...-------- ( -14.60) >consensus AAAAAAA___UAAACACAGUCUGAAAGUAGCCAACUAAACUUUUAUUAAAAUUGUAAAUAUUUAUCAACAUUCAUAAACCACAGCUACCACAGCAAAUGUGGUUGUAUGGUGCUGCA ..........................(((((....((((..(((((.......)))))..)))).............((((..((.((((((.....)))))).)).))))))))). (-13.41 = -15.47 + 2.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:20 2006