Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,659,029 – 13,659,129 |
Length | 100 |
Max. P | 0.687288 |
Location | 13,659,029 – 13,659,129 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 87.12 |
Mean single sequence MFE | -28.32 |
Consensus MFE | -23.02 |
Energy contribution | -23.58 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.04 |
Mean z-score | -1.59 |
Structure conservation index | 0.81 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.687288 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13659029 100 + 22407834 CAGCCGUGCCACGAUUUCGCGUUUGUUGUGCAGCU-GCUGGGUGAAAAUGUUGCACAGCAUGCAUAAAUAAUAAACGGCAAGCCAGCGAACACACACACAC .....(((.......((((((((((((((...(((-((((.(..(.....)..).))))).))....)))))))))((....)).)))))......))).. ( -29.82) >DroSec_CAF1 15506 95 + 1 CAGCCGUGCCACGAUUUCGCGUUUGUUGUGCAGCU-GCUGGGUGAAAAUGUUGCACAGCAUGCAUAAAUAAUAAACGGCAAGCCAGCGAACACACA----- .....(((.......((((((((((((((...(((-((((.(..(.....)..).))))).))....)))))))))((....)).))))))))...----- ( -28.71) >DroYak_CAF1 15043 93 + 1 CAGCCGUGCCACGAUUUCGCGUUUGUUGUGCAGCU-GCUGGGUGAAAAUGUUGCACAGCAUGCAUAAAUAAUAAACGGCAAGCCAGCGCACACA------- .....((((...(....)(((((((((((...(((-((((.(..(.....)..).))))).))....)))))))))((....)).))))))...------- ( -28.50) >DroAna_CAF1 16506 101 + 1 UAACAGAGAUCCGAUUUCGCGUUUGUUGUGCAACUGGCUGGGUGAAAAUGUUGCACAGCAUGCAUAAAUAAAAACCGGCAAGCUACCUUGCACACACAAAC .....(((((...)))))..(((((((((((((((.(((((..........((((.....))))..........))))).)).....))))))).)))))) ( -26.25) >consensus CAGCCGUGCCACGAUUUCGCGUUUGUUGUGCAGCU_GCUGGGUGAAAAUGUUGCACAGCAUGCAUAAAUAAUAAACGGCAAGCCAGCGAACACACA_____ ..(((((......((((.(((..(((((((((((...............))))))))))))))..)))).....)))))...................... (-23.02 = -23.58 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:18 2006