Locus 4782

Sequence ID 2L_DroMel_CAF1
Location 13,656,488 – 13,656,608
Length 120
Max. P 0.662202
window7573

overview

Window 3

Location 13,656,488 – 13,656,608
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 95.56
Mean single sequence MFE -28.70
Consensus MFE -26.99
Energy contribution -27.77
Covariance contribution 0.78
Combinations/Pair 1.03
Mean z-score -1.71
Structure conservation index 0.94
SVM decision value 0.27
SVM RNA-class probability 0.662202
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13656488 120 - 22407834
ACUCGCAAGCUGGUAAAUCAGAGCCACUUUAAAUUGAGCAUGUUACGUUGCAUGGACCGUCAGAAGGACUCUUCUCUACCCUCUACCCAAAACAUAACUCCACUGGCUUACCGGCAAAGU
........((((((((..(((.((((........)).))(((((...(((..((((..((.(((((....)))))..))..))))..)))))))).......)))..))))))))..... ( -29.20)
>DroSec_CAF1 12961 120 - 1
ACUCGCAAGCUGGUAAAUCAGAGCCACUUUAAAUUGAGCAUGUUACGUUGCAUAGACCGUCAGAAGGACCCUUCUCUACCCUCUACCCAAAACAUAACUCCACUGGCUUACCGGCAAAGU
........((((((((..(((.((((........)).))(((((...(((..((((..((.(((((....)))))..))..))))..)))))))).......)))..))))))))..... ( -31.20)
>DroEre_CAF1 12610 120 - 1
ACACACAAGCUGUGAAAUCAGAGCCACUUUAAAUUGAGCAUGUUACGUAGCAUGGAGCGUCAGAAGGACCCUUCUCUACCCUCUACCCAAAACAUAACUCCACUGGCUUACCGGCAAAGU
........((((((....))((((((............((((((....))))))(((.((.(((((....)))))..)).)))....................))))))..))))..... ( -25.70)
>consensus
ACUCGCAAGCUGGUAAAUCAGAGCCACUUUAAAUUGAGCAUGUUACGUUGCAUGGACCGUCAGAAGGACCCUUCUCUACCCUCUACCCAAAACAUAACUCCACUGGCUUACCGGCAAAGU
........((((((((..(((.((((........)).))..((((.(((...((((..((.(((((....)))))..))..)))).....))).))))....)))..))))))))..... (-26.99 = -27.77 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:17 2006