Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,651,502 – 13,651,604 |
Length | 102 |
Max. P | 0.541730 |
Location | 13,651,502 – 13,651,604 |
---|---|
Length | 102 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.40 |
Mean single sequence MFE | -20.70 |
Consensus MFE | -11.85 |
Energy contribution | -12.35 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.12 |
Mean z-score | -1.89 |
Structure conservation index | 0.57 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.541730 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13651502 102 - 22407834 UGGC---UAGA---AAAACAGCAGUUUGCUUUAUUUAAAAAUCCCAUGGCAACAACUUUGC------------CAAAUCAGUUGCGAACUGACCAAAUAAAAACCGCACAACUUGCACCA ....---....---......((((((((((((((((..........((((((.....))))------------))..(((((.....)))))..)))))))....))).))).))).... ( -20.00) >DroPse_CAF1 20062 117 - 1 AAGCGACAAGAAAGAAAAAUGUAGUUUACUUUAUUUAAAAAACCCGUGGCAACAACUUUGCCCUGCCGCAGACCAAAUCAGCUGCAAGCUGACCAAAUAAAAACCCCGCAACUCGC---A ..((((..........(((((.((....)).))))).........((((.......(((((......))))).....(((((.....))))).............))))...))))---. ( -21.40) >DroSim_CAF1 16733 102 - 1 UGGC---UAGA---AAAACAGCAGUUUGCUUUAUUUAAAAAUCCCAUGGCAACAACUUUGC------------CAAAUCAGUUGCGAACUGACCAAAUAAAAACCGCACAACUUGCACCA ....---....---......((((((((((((((((..........((((((.....))))------------))..(((((.....)))))..)))))))....))).))).))).... ( -20.00) >DroPer_CAF1 20387 117 - 1 AAGCGACAAGAAAGAAAAAUGUAGUUUACUUUAUUUAAAAAACCCGUGGCAACAACUUUGCCCUGCCGCAGACCAAAUCAGCUGCAAGCUGACCAAAUAAAAACCCCGCAACUCGC---A ..((((..........(((((.((....)).))))).........((((.......(((((......))))).....(((((.....))))).............))))...))))---. ( -21.40) >consensus AAGC___AAGA___AAAAAAGCAGUUUACUUUAUUUAAAAAACCCAUGGCAACAACUUUGC____________CAAAUCAGCUGCAAACUGACCAAAUAAAAACCCCACAACUCGC___A ....................((((((((((((((((...........(((((.....)))))...............(((((.....)))))..)))))))....))).)))).)).... (-11.85 = -12.35 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:11 2006