Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,650,450 – 13,650,554 |
Length | 104 |
Max. P | 0.575738 |
Location | 13,650,450 – 13,650,554 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 73.46 |
Mean single sequence MFE | -34.27 |
Consensus MFE | -12.85 |
Energy contribution | -14.60 |
Covariance contribution | 1.75 |
Combinations/Pair | 1.00 |
Mean z-score | -2.58 |
Structure conservation index | 0.37 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.575738 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13650450 104 + 22407834 AA-------AAAACACAGACG--CAGAGUGUAGCAUACAUUUUCGCGUUGGGCUUUUGUGUGCAGCUGCUUCCAGGGCAUUUUUUUUU-------UGUUUUUUCGUUUUGCAUUCGAAAU ((-------(((((((.((((--(((((((((...)))))))).))))).)(((((.(...((....))..).)))))..........-------)))))))).((((((....)))))) ( -22.10) >DroPse_CAF1 18806 112 + 1 AAUGCCGCUUACACAUGG-CGAAAAAAGUGUAGCAUACUUUUUUGCGCGG-GCUUUUGUGUGCAGCUGCUGCU---GCAUUUCCCCGUCGCGUCGUGUGUU---UUUUUGCAUACGAAAU .((((.....((((((((-(.((((((((((...))))))))))((((((-(.......(((((((....)))---))))...)))).)))))))))))).---.....))))....... ( -44.90) >DroSim_CAF1 15677 101 + 1 AA-------AACACAUAGACG--CAGAGUGAAGCAUACAUUUUCGCGUUGGGCUUUUGUGUGCAGCUGCUUCCAGGGCAUUUUUUUUU----------UUUUUCGUUUUGCAUUCGAAAU ..-------...........(--((((((((((((((((.....((.....))...)))))))...((((.....)))).........----------...))))))))))......... ( -22.30) >DroPer_CAF1 19179 113 + 1 AAUGCCGCUUACACAUGG-CGAAAAAAGUGUAGCAUACUUUUUUGCGCGGGGCUUUUGUGUGCAGCUGCUGCU---GCAUUUCCCCGUCGCGUCGUGUGUU---UUUUUGCAUACGAAAU .((((.....((((((((-(.((((((((((...))))))))))((((((((.......(((((((....)))---))))..))))).)))))))))))).---.....))))....... ( -47.80) >consensus AA_______AACACAUAG_CG__AAAAGUGUAGCAUACAUUUUCGCGCGGGGCUUUUGUGUGCAGCUGCUGCC___GCAUUUCCCCGU_______UGUGUU___GUUUUGCAUACGAAAU .........................((((((((((((((.....((.....))...)))))))...(((.......))).............................)))))))..... (-12.85 = -14.60 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:04 2006