Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,644,901 – 13,645,004 |
Length | 103 |
Max. P | 0.658535 |
Location | 13,644,901 – 13,645,004 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 77.07 |
Mean single sequence MFE | -18.43 |
Consensus MFE | -11.51 |
Energy contribution | -11.28 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.08 |
Mean z-score | -1.42 |
Structure conservation index | 0.62 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.658535 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13644901 103 + 22407834 CUUCCAUAACAACCAUUUCCCCCCCAGCGCCGUGCCGUUUGAUUUACUUCAAACAAUUGGCAACAUCAUACAUCAACGCGCUU-UUGUUUUUGUUCUGAGCCUU ..........................((((((....((((((......))))))...))))....(((.(((..((((.....-.))))..)))..)))))... ( -17.10) >DroPse_CAF1 11893 84 + 1 ------UGGGGGC---------UAAGGCUCAGUGCCGUUUGAUUUACUUCAAACAAUUGGCAACAUCAUACAUCAACGCGUUUUUUGUUCUUGUUUUGG----- ------..(..((---------((((((.....)))((((((......))))))..)))))..)..((.(((..((((.......))))..)))..)).----- ( -20.10) >DroEre_CAF1 10137 99 + 1 CUUCCAUAACAACCAUUUUC--CCCAGCUCCGUGCCGUUUGAUUUACUUCAAACAAUUGGCAACAUCAUACAUCAACGCGCUU-UUGUUUUUGCUCCUGGC--U ....................--.((((....((((.((((((......))))))...((....))............))))..-..((....))..)))).--. ( -16.40) >DroYak_CAF1 10351 101 + 1 CGUCCAUAACAACCAUUUCC--CCCAGCUCCGUGCCGUUUGAUUUACUUCAAACAAUUGGCAACAUCAUACAUCAACGCGCUU-UUGUUUUUGCUCUGGGCCCU ....................--(((((....((((.((((((......))))))...((....))............))))..-..((....)).))))).... ( -19.50) >DroAna_CAF1 10288 93 + 1 AGUCCAUA-UAUCCAU--CCA-ACCAGAGCGGUGCCGUUUGAUUUACUUCAAACAAUUGGCAACAUCAUACAUCAACGCGCCU-UUGUUUUUGUUUUG------ ........-.......--..(-((.((((((((((.((((((......))))))...((....))............))))).-..))))).)))...------ ( -18.70) >DroPer_CAF1 12266 84 + 1 ------UGGGAGC---------UAAGGCUCAGUGCCGUUUGAUUUACUUCAAACAAUUGGCAACAUCAUACAUCAACGCGUUUUUUGUUCUUGUUUUGG----- ------..(..((---------((((((.....)))((((((......))))))..)))))..)..((.(((..((((.......))))..)))..)).----- ( -18.80) >consensus C_UCCAUAACAACCAU__CC__CCCAGCUCCGUGCCGUUUGAUUUACUUCAAACAAUUGGCAACAUCAUACAUCAACGCGCUU_UUGUUUUUGUUCUGG_____ ...............................((((.((((((......))))))...((....))............))))....................... (-11.51 = -11.28 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:02 2006