Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,642,969 – 13,643,068 |
Length | 99 |
Max. P | 0.973900 |
Location | 13,642,969 – 13,643,068 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 85.56 |
Mean single sequence MFE | -30.96 |
Consensus MFE | -24.46 |
Energy contribution | -26.26 |
Covariance contribution | 1.80 |
Combinations/Pair | 1.13 |
Mean z-score | -2.42 |
Structure conservation index | 0.79 |
SVM decision value | 1.72 |
SVM RNA-class probability | 0.973900 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13642969 99 + 22407834 UUGUAAUAAGCUUGCAGGCGCAAAAGUGGAAAGUGGGGACGUUGCAUUAUAAAACAAUCGCCAUGUCCUGGCAUUACCCAUUUAAAUCGCGUUUGCAAU ...........((((((((((..((((((...((.(((((((.(((((.......))).)).))))))).)).....)))))).....)))))))))). ( -31.40) >DroSec_CAF1 8433 99 + 1 UUGUUAUAAGUUUGCAGGCGCAAAAGUGGAAAGUGGGGACGUUGCAUUAUAAAAAAAUCGCCAUGUCCUGGCAUUACCCACUUAAGUCGCGUUUGCAAU ...........((((((((((..((((((...((.(((((((.(((((.......))).)).))))))).)).....)))))).....)))))))))). ( -34.00) >DroSim_CAF1 8006 99 + 1 UUGUUAUAAGUUUGCAGGCGCAAAAGUGGAAAGUGGGGACGUUGCAUUAUAAAAAAAUCGCCAUGUCCUGGCAUUACCCACUUAAGUCGCGUUUGCAAU ...........((((((((((..((((((...((.(((((((.(((((.......))).)).))))))).)).....)))))).....)))))))))). ( -34.00) >DroEre_CAF1 8302 99 + 1 CUUUUAUUAGAUUGCAGGGGCAAAUCUGGAAAGUGGGGACGCUGCAUUAUGAAAGGAUCGCCAUGUCCUGGCGUCACUCAUUCAAAUCGCGUUUGCAAU ..........((((((((.((..........((((....))))......((((((((.(((((.....))))))).))..))))....)).)))))))) ( -29.20) >DroYak_CAF1 8492 95 + 1 CU-AAGUUAGAUUGCAGG---AAAGCUGGAAAGGUGGGACGCUGCAUUUUGAAAGGAUCUCCAUGUCCUGGCGUCACCCAUUUAAGUCGCGUUUGCAAU ..-.......((((((((---...((.((..((((((((((((..........(((((......))))))))))..)))))))...)))).)))))))) ( -26.20) >consensus UUGUUAUAAGAUUGCAGGCGCAAAAGUGGAAAGUGGGGACGUUGCAUUAUAAAAAAAUCGCCAUGUCCUGGCAUUACCCAUUUAAGUCGCGUUUGCAAU ...........((((((((((..((((((...((.(((((((.(((((.......))).)).))))))).)).....)))))).....)))))))))). (-24.46 = -26.26 + 1.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:01 2006