Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,640,424 – 13,640,525 |
Length | 101 |
Max. P | 0.805276 |
Location | 13,640,424 – 13,640,525 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 79.25 |
Mean single sequence MFE | -23.68 |
Consensus MFE | -18.04 |
Energy contribution | -18.40 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.06 |
Mean z-score | -1.42 |
Structure conservation index | 0.76 |
SVM decision value | 0.63 |
SVM RNA-class probability | 0.805276 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13640424 101 + 22407834 UGAUUACGCUGAUCUUGUUGUGGGACAGGGUCAAGCGCGUGAUGUUGGACAUGUUGACUGCAA------AAAAAAUUAUA-UUA-AUAAGAAUACUAAACUCUUUAAAA--- ..(((((((((((((((((....))))))))))...)))))))((..(.....)..)).....------...........-...-........................--- ( -19.70) >DroSec_CAF1 5883 108 + 1 UGAUCACGCUGAUCUUGUUGUGGGACAGGGUCAGGCGCGUGAUGUUGGACAUGUUGACUGCAAAUAUAAAAGAAAUUAUA-UUAAAUAGGAAUACUAAACACUUUAAAA--- ..(((((((((((((((((....))))))))))...))))))).(((((..((((.......(((((((......)))))-))...(((.....))))))).)))))..--- ( -25.30) >DroSim_CAF1 5456 108 + 1 UGAUCACGCUGAUCUUGUUGUGGGACAGGGUCAGGCGCGUGAUGUUGGACAUGUUGACUGCAAAUAUAAAAGAAAUUAUA-UUAAAUAGGAAUACUAAACACUUUAAAA--- ..(((((((((((((((((....))))))))))...))))))).(((((..((((.......(((((((......)))))-))...(((.....))))))).)))))..--- ( -25.30) >DroEre_CAF1 5904 98 + 1 UGAUCACGCUGAUCUUGUUGUGGGACAGGGUCAGGCGCGUGAUGUUGGACAUGGUGACUGCAAGUUAAAAA----AGGUA-UUAAAUAAGAAU-UUAAGCUUAU-------- ..(((((((((((((((((....))))))))))...)))))))....(.((.(....))))..........----((((.-((((((....))-))))))))..-------- ( -24.90) >DroYak_CAF1 5946 108 + 1 UGAUCACGCUGAUCUUGUUGAGCGACAGGGUCAGGCGCGUGAUGUUGGACAUGUUGACUGCAAAUUAAAAAU---AUGUA-UUUAAUAAGAUUACUAAGCAUUUUCACAAAU ..(((((((((((((((((....))))))))))...)))))))..((((.(((((.....(..((((((...---.....-))))))..).......))))).))))..... ( -27.10) >DroAna_CAF1 5776 99 + 1 UGAUCACACUGAUCUUGUUAUGUGACAGUGUGAGGCGAGUGAUGUUGGACAUGUUGACUAUAAAAUAAAAU----UUUUAGUUAGAUAAUAAG-CUAAAUAUAU-------- ...((((((((.((.........))))))))))(((.....(((.....))).(((((((.(((......)----)).))))))).......)-))........-------- ( -19.80) >consensus UGAUCACGCUGAUCUUGUUGUGGGACAGGGUCAGGCGCGUGAUGUUGGACAUGUUGACUGCAAAUUAAAAA____UUAUA_UUAAAUAAGAAUACUAAACACUUUAAAA___ ..(((((((((((((((((....))))))))))...)))))))..................................................................... (-18.04 = -18.40 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:00 2006