Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,636,024 – 13,636,119 |
Length | 95 |
Max. P | 0.850397 |
Location | 13,636,024 – 13,636,119 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 84.24 |
Mean single sequence MFE | -51.15 |
Consensus MFE | -39.10 |
Energy contribution | -38.97 |
Covariance contribution | -0.13 |
Combinations/Pair | 1.26 |
Mean z-score | -2.52 |
Structure conservation index | 0.76 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.800259 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13636024 95 + 22407834 CG---------GG---UUCCAUUGGUGGUGGUGUCCAGGCGGCCAUUAGCAGCGGCGGUGUGGUGGCUCGGGCCCAGCUGCCGCUGCCAUUGCCGCCGCCAAAUGGA ..---------..---.(((((((((((......)).((((((.....(((((((((((...(.(((....)))).)))))))))))....))))))))).)))))) ( -52.70) >DroVir_CAF1 1483 95 + 1 UG---------GG---UGCCAUUGGUGGUGGUGUGCAGGCGGCCAUCAGCAGCGGCGGCGUUGUGGCGCGUGCUCAGCUGCCGCUGCCGUUGCCGCCGGCAAAUGCA ((---------.(---..((((.....))))..).))((((((...(.(((((((((((.....(((....)))..))))))))))).)..)))))).((....)). ( -50.40) >DroEre_CAF1 1491 95 + 1 CG---------GG---UUCCAUUGGUGGUGGUGUUCAGGCGGCCAUUAGCAGCGGCGGAGUGGUGGCCAGGGCCCAGCUGCCGCUGCCAUUGCCGCCGCCAAAUGGA ..---------..---.(((((((((((((((.....((...))....((((((((((....(.(((....))))..))))))))))....))))))))).)))))) ( -50.60) >DroWil_CAF1 1490 104 + 1 CGCCAGUUACAGG---UUCACUGGGUGGUGGUGUCCAGGCGGCCAUUAGCAGCGGCGGCGUUGUGGCUCGCGCCCAGCUGCCGUUGCCAUUGCCGCCGGCUAAUGCA .(((.......((---.(((((....)))))...)).((((((.....(((((((((((..((.(((....))))))))))))))))....)))))))))....... ( -52.00) >DroMoj_CAF1 2013 98 + 1 UG---------GGUGGUGCUAUGGGUGGUGGUGUGCAGGCGGCCAUUAGCAGCGGUGGUGUGGUGGCGCGUGCGCAGCUGCCACUGCCAUUGCUGCCGGCAACUGCA ..---------.(..(((((...((((((.((......)).)))))).(((((((((((((((..((((....)).))..)))).))))))))))).))).))..). ( -51.40) >DroAna_CAF1 1495 95 + 1 CG---------GG---UUCCAUUGGUGGUGGUGUGCAGGCGGCCAUUAGCAGCGGCGGUGUGGUGGCUCGGGCCCAGCUGCCGCUGCCUCUGCCGCCGCCGAAUGCA ((---------((---(.((((.....))))...)).((((((.....(((((((((((...(.(((....)))).)))))))))))....)))))).)))...... ( -49.80) >consensus CG_________GG___UUCCAUUGGUGGUGGUGUGCAGGCGGCCAUUAGCAGCGGCGGUGUGGUGGCUCGGGCCCAGCUGCCGCUGCCAUUGCCGCCGCCAAAUGCA ..................((((.....))))......((((((.....(((((((((((...(.(((....)))).)))))))))))....)))))).((....)). (-39.10 = -38.97 + -0.13)
Location | 13,636,024 – 13,636,119 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 84.24 |
Mean single sequence MFE | -42.72 |
Consensus MFE | -33.31 |
Energy contribution | -33.95 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.10 |
Mean z-score | -2.63 |
Structure conservation index | 0.78 |
SVM decision value | 0.79 |
SVM RNA-class probability | 0.850397 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13636024 95 - 22407834 UCCAUUUGGCGGCGGCAAUGGCAGCGGCAGCUGGGCCCGAGCCACCACACCGCCGCUGCUAAUGGCCGCCUGGACACCACCACCAAUGGAA---CC---------CG ((((((.((.((((((..((((((((((.....(((....)))........))))))))))...))))))(((......))))))))))).---..---------.. ( -46.72) >DroVir_CAF1 1483 95 - 1 UGCAUUUGCCGGCGGCAACGGCAGCGGCAGCUGAGCACGCGCCACAACGCCGCCGCUGCUGAUGGCCGCCUGCACACCACCACCAAUGGCA---CC---------CA ......(((.((((((..((((((((((.((((.((....))))....)).))))))))))...)))))).))).....(((....)))..---..---------.. ( -44.10) >DroEre_CAF1 1491 95 - 1 UCCAUUUGGCGGCGGCAAUGGCAGCGGCAGCUGGGCCCUGGCCACCACUCCGCCGCUGCUAAUGGCCGCCUGAACACCACCACCAAUGGAA---CC---------CG (((((((((.((((((..((((((((((((...(((....)))....))..))))))))))...))))))((.....)))))..)))))).---..---------.. ( -45.90) >DroWil_CAF1 1490 104 - 1 UGCAUUAGCCGGCGGCAAUGGCAACGGCAGCUGGGCGCGAGCCACAACGCCGCCGCUGCUAAUGGCCGCCUGGACACCACCACCCAGUGAA---CCUGUAACUGGCG .......(((((((((..(((((.((((.(((((((....))).))..)).)))).)))))...)))))).)).)........(((((...---......))))).. ( -46.40) >DroMoj_CAF1 2013 98 - 1 UGCAGUUGCCGGCAGCAAUGGCAGUGGCAGCUGCGCACGCGCCACCACACCACCGCUGCUAAUGGCCGCCUGCACACCACCACCCAUAGCACCACC---------CA (((((..(((((((((..(((..((((..((.((....))))..)))).)))..))))))...)))...)))))......................---------.. ( -33.10) >DroAna_CAF1 1495 95 - 1 UGCAUUCGGCGGCGGCAGAGGCAGCGGCAGCUGGGCCCGAGCCACCACACCGCCGCUGCUAAUGGCCGCCUGCACACCACCACCAAUGGAA---CC---------CG ((((...((((((..((..(((((((((.....(((....)))........)))))))))..)))))))))))).....(((....)))..---..---------.. ( -40.12) >consensus UGCAUUUGCCGGCGGCAAUGGCAGCGGCAGCUGGGCCCGAGCCACCACACCGCCGCUGCUAAUGGCCGCCUGCACACCACCACCAAUGGAA___CC_________CG ..........((((((..((((((((((.(...(((....)))......).))))))))))...))))))..................................... (-33.31 = -33.95 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:59 2006