| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 13,632,949 – 13,633,062 |
| Length | 113 |
| Max. P | 0.508264 |
| Location | 13,632,949 – 13,633,062 |
|---|---|
| Length | 113 |
| Sequences | 3 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 88.47 |
| Mean single sequence MFE | -40.51 |
| Consensus MFE | -32.81 |
| Energy contribution | -34.03 |
| Covariance contribution | 1.23 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.81 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.508264 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13632949 113 + 22407834 AGU----GUGGGAAUAGGCAUGGAUUGGAUUGGAUGAGCGCCGGAUGAAAGGGCCGUUUGAAGAGGUCCUUUUUGUUUGUCUGGCGUGGUGGGGGCUCACUACGCACUCGUUUACAC .((----(((((...((((....................((((((((((((((((.........))))))))).....)))))))(((((((....))))))))).))..))))))) ( -39.70) >DroSim_CAF1 13192 113 + 1 AGU----GUGGGAAUAGGCAUGGAUUGGAUUGGAUGAGCGCCGGAUGAAUGGGGCGUUUGAAGAGGUCCUUUUUGUUUGUCUGGCGUGGUGGGGGCUCACUACGCACCCGUUAACAC .((----(((((..((((((.(((..(((((....(((((((..........))))))).....)))))..)))...))))))(((((((((....))))))))).)))....)))) ( -41.40) >DroYak_CAF1 1441 111 + 1 AGUGGGAGUGGCAGUGGGCAUGG-----AUUGGAUGAGCUCCGGAUGAAAGGGGCGUUGAAAGAGGUCCUUUUUGUUUGUCUGGCGUGGUGG-GGCUCACUACGCACCCGUUUACAC .(((..((((((((.((((....-----.........))))((((..((((((((.((....)).))))))))..)))).)))((((((((.-....))))))))..)))))..))) ( -40.42) >consensus AGU____GUGGGAAUAGGCAUGGAUUGGAUUGGAUGAGCGCCGGAUGAAAGGGGCGUUUGAAGAGGUCCUUUUUGUUUGUCUGGCGUGGUGGGGGCUCACUACGCACCCGUUUACAC .........(((..(((((............((.......))(((..((((((((.((....)).))))))))..))))))))(((((((((....))))))))).)))........ (-32.81 = -34.03 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:57 2006