Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,632,062 – 13,632,174 |
Length | 112 |
Max. P | 0.754259 |
Location | 13,632,062 – 13,632,174 |
---|---|
Length | 112 |
Sequences | 3 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 76.59 |
Mean single sequence MFE | -34.67 |
Consensus MFE | -22.15 |
Energy contribution | -24.27 |
Covariance contribution | 2.11 |
Combinations/Pair | 1.04 |
Mean z-score | -1.66 |
Structure conservation index | 0.64 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.754259 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13632062 112 + 22407834 UUUUGGGGCAUCUGCAGAGCGAUUGGGGCUUAGCAAUC-AUCCAAUCAGCUGACCUCCUUCAGCGCGUACA----GCGUAUGCAAUCAACCGUUAUGGCCCGCAACGGUGCUCCACC ...(((((((((.((...))(.((((((((((((....-.........(((((......)))))((((((.----..))))))........)))).))))).))))))))))))).. ( -40.20) >DroSim_CAF1 12316 117 + 1 NNNNNNNNNNNNNNNNNNCCGAUUGGGGCUUAGCCAUCUAUCCAAUCAGCUGACCUCCUUCAGCUGCUGCAAUAUGGGUAUGCAAUCAAUCAUUAUGGCCCGCAACCGUGCCUCAAA ....................((((((.((.((.((((.....((..(((((((......))))))).))....)))).)).))..)))))).....(((.((....)).)))..... ( -28.00) >DroYak_CAF1 523 112 + 1 UUUUGGGGCAUCUGCGGAGCGCAUGGGGCUUAGCAAUC-AUCCAAUCAGCUGACCUCCUUCAGCGCGUACA----GCGUAUGCAAUCAACCGUUAUGGCCCGCAACCGUGAUCCACC ..(((((((....((((.((....((((.(((((....-.........))))).))))....))((((((.----..))))))......))))....)))).)))............ ( -35.82) >consensus UUUUGGGGCAUCUGC_GAGCGAUUGGGGCUUAGCAAUC_AUCCAAUCAGCUGACCUCCUUCAGCGCGUACA____GCGUAUGCAAUCAACCGUUAUGGCCCGCAACCGUGCUCCACC ..................(((.((((((((((((..............(((((......)))))((((((.......))))))........)))).))))).))).)))........ (-22.15 = -24.27 + 2.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:56 2006