Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,391,436 – 1,391,526 |
Length | 90 |
Max. P | 0.510334 |
Location | 1,391,436 – 1,391,526 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 80.21 |
Mean single sequence MFE | -30.75 |
Consensus MFE | -22.31 |
Energy contribution | -22.26 |
Covariance contribution | -0.05 |
Combinations/Pair | 1.25 |
Mean z-score | -1.07 |
Structure conservation index | 0.73 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.510334 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1391436 90 - 22407834 UCCCUCUUC--C-AUCCCCAGCGCUACUUCAAUAGUGGUCUGGAUCUGAGCGAGGCUCGUGCCAGUCUGCUGUCCGGAGAUGUUGUGGAGCUG .........--.-.(((.(((((...((((.((((..(.((((...(((((...)))))..)))).)..))))..)))).))))).))).... ( -30.20) >DroVir_CAF1 26275 86 - 1 UCCCUUCU---G-AA---CAGCGUUAUUUCAAUAGCGGCCUGGAUCUGAGCGAGGCACGCGCCAGCCUAUUGUCCGGCGAUGUUGUGGAGCUG ...((((.---.-.(---(((((((.........(((((((.(.......).)))).)))....(((........)))))))))))))))... ( -26.10) >DroGri_CAF1 13032 89 - 1 UCUCUUUUCUCA-AA---CAGCGCUACUUCAAUAGUGGCUUGGAUUUGAGUGAGGCACGCGCCAGUCUGCUGUCUGGCGAUGUUGUGGAGCUA .(((....((((-(.---(((.((((((.....)))))))))...))))).)))(((((((((((.(....).)))))).)).)))....... ( -30.30) >DroEre_CAF1 10057 91 - 1 UUCCAUUUC--CCCUGGGCAGCGCUACUUCAAUAGUGGCCUGGAUCUGAGCGAGGCUCGUGCCAGUCUGCUGUCCGGAGAUGUUGUGGAGCUG ((((((.((--..(((((((((((((((.....))))))((((...(((((...)))))..))))...))))))))).))....))))))... ( -39.90) >DroYak_CAF1 9874 90 - 1 UCCCUCUUC--C-CUUUCCAGCGCUACUUCAAUAGUGGUCUGGAUCUGAGCGAGGCUCGUGCCAGUCUGCUGUCCGGCGAUGUUGUGGAGCUG ...((((((--.-...(((((.((((((.....)))))))))))...))).)))((((.(((..(((.(((....))))))...))))))).. ( -28.60) >DroAna_CAF1 9810 84 - 1 AAUGUAU---------UGCAGCGGUACUUCAACAGUGGCUUGGAUCUGAGCGAAGCUCGAGCCAGUCUCCUGUCCGGAGAUGUGGUCGAGCUG ...((((---------((...))))))..........((((......))))..(((((((.(((((((((.....)))))).)))))))))). ( -29.40) >consensus UCCCUUUUC__C_AU___CAGCGCUACUUCAAUAGUGGCCUGGAUCUGAGCGAGGCUCGUGCCAGUCUGCUGUCCGGAGAUGUUGUGGAGCUG ..................((((.((((..((((((..(.((((...(((((...)))))..)))).)..)))).......))..)))).)))) (-22.31 = -22.26 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:05 2006