Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,583,915 – 13,584,032 |
Length | 117 |
Max. P | 0.500000 |
Location | 13,583,915 – 13,584,032 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 78.36 |
Mean single sequence MFE | -28.58 |
Consensus MFE | -18.99 |
Energy contribution | -19.67 |
Covariance contribution | 0.69 |
Combinations/Pair | 1.09 |
Mean z-score | -1.56 |
Structure conservation index | 0.66 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13583915 117 + 22407834 UAUGGCAGACUCUCAGUUAAUGGGAGUUU---UCUCAACCUCUUCGAAAUGUUUUUCCUGGCCAACCAGACGAACUCGGCCUACACCAGGCUCCAGGCUUCUGGCUCCAGACUUCCAGAU ..(((.(((((((((.....)))))))..---.............((((....))))((((....(((((.(.....(((((.....))))).....).)))))..)))).)).)))... ( -30.50) >DroSec_CAF1 17039 113 + 1 UAUGGCAGACUCUCAGUUAAUGGGAGUUUCCUUCCCAACCUCUUCGAAAUGUUUUUCCUGGCCAACCAGGCGAACUCGGCCUACACCAGGCUC-------CUGGCUCCAGACUUCCAGAU ...((.(((((((((.....)))))))))))..............((((....))))((((....(((((((....))((((.....)))).)-------))))..)))).......... ( -31.40) >DroEre_CAF1 17289 115 + 1 UAUCACAGACUCUC-GUUAAUAGGAGUUU---UCCCAACCUCUUCGAAGUGCUUUUCCUGGCCAAACAGGCGAGCCUGGCCUACACCAGGCUCCAGACUCCAAAUUCCAGA-UUCCAGAC .......((.(((.-(......(((((..---.............((((....))))((((((.....)))((((((((......)))))))))))))))).....).)))-.))..... ( -31.00) >DroYak_CAF1 14136 94 + 1 UAUGGCAGACUCUCAGUUAAUAGGAGUUU---UCCCAACCUCUUUGAAAUGUUUUUCCUGGC-AACCAGGCAAACCCGGCCUACACCAGGCUCCAGA----------------------C ..(((.((((((..(.....)..))))))---..))).....((((....((((..(((((.-..))))).))))..(((((.....))))).))))----------------------. ( -21.40) >consensus UAUGGCAGACUCUCAGUUAAUAGGAGUUU___UCCCAACCUCUUCGAAAUGUUUUUCCUGGCCAACCAGGCGAACCCGGCCUACACCAGGCUCCAGA___CUGGCUCCAGA_UUCCAGAC ......(((((((((.....))))))))).....................((((..(((((....))))).))))..(((((.....)))))............................ (-18.99 = -19.67 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:54 2006