Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,583,406 – 13,583,606 |
Length | 200 |
Max. P | 0.684648 |
Location | 13,583,406 – 13,583,526 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 98.89 |
Mean single sequence MFE | -25.73 |
Consensus MFE | -23.70 |
Energy contribution | -23.70 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.89 |
Structure conservation index | 0.92 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.684648 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13583406 120 - 22407834 CGGAAGCCAGCCCAAAUUUAUAGGCAACAUAAAAUGGCAGCAGACAAUGCCAAUAACAAUAAACGAAAAUAAAGUUUAUGACCGUGCUAAACACAGCGGCGAGCCGGAAAAUGCCCAACA (((..(((.(((..........))).((......(((((........)))))......((((((.........))))))....))(((......))))))...))).............. ( -25.60) >DroSec_CAF1 16534 120 - 1 CGGAAGCCAGCCCAAAUUUAUAGGCAACAUAAAAUGGCAGCAGACAAUGCCAAUAACAAUAAACGAAAAUAAAGUUUAUGACCGUGCUAAACACAGCGGCGAGCCGGAGAAUGCCCAACA (((..(((.(((..........))).((......(((((........)))))......((((((.........))))))....))(((......))))))...))).............. ( -25.60) >DroYak_CAF1 13609 120 - 1 CGGAAGCCAGCCCAAAUUUAUAGGCAACAUAAAAUGGGAGCAGACAAUGCCAAUAACAAUAAACGAAAAUAAAGUUUAUGACCGUGCUAAACACAGCGGCGAGCCGGAAAAUGCCCAACA (((..(((..((((..(((((.(....)))))).)))).((.................((((((.........))))))....(((.....))).)))))...))).............. ( -26.00) >consensus CGGAAGCCAGCCCAAAUUUAUAGGCAACAUAAAAUGGCAGCAGACAAUGCCAAUAACAAUAAACGAAAAUAAAGUUUAUGACCGUGCUAAACACAGCGGCGAGCCGGAAAAUGCCCAACA (((..(((.(((..........)))........((((..(((.....)))........((((((.........))))))..))))(((......))))))...))).............. (-23.70 = -23.70 + -0.00)
Location | 13,583,486 – 13,583,606 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.28 |
Mean single sequence MFE | -26.88 |
Consensus MFE | -21.56 |
Energy contribution | -22.88 |
Covariance contribution | 1.31 |
Combinations/Pair | 1.03 |
Mean z-score | -2.22 |
Structure conservation index | 0.80 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.670307 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13583486 120 - 22407834 UGGCAAACAACAACAAAACCAUUAACAUGAAAUUACAAGGAAUAAAUAAAGUACAUUCCUGUUUCGGCCUUUCUUGGCUUCGGAAGCCAGCCCAAAUUUAUAGGCAACAUAAAAUGGCAG ((((........................(((((....((((((...........)))))))))))((((......))))......))))(((....(((((.(....))))))..))).. ( -24.60) >DroSec_CAF1 16614 120 - 1 UGGCAAACAACAACAAAACCAUUAACAUGAAAUUACAAGGAAUAAAUAAAGUAGAUUCCUGUUUCGGCCUUCCAUGGCUUCGGAAGCCAGCCCAAAUUUAUAGGCAACAUAAAAUGGCAG ((((........................(((((....((((((...........)))))))))))((((......))))......))))(((....(((((.(....))))))..))).. ( -24.90) >DroEre_CAF1 16814 120 - 1 UGGCAAACAACAACAAAACCAUUAACAUGAAAUUACAAGGAAUAAAUAAAGUAGAUUCCUGUUUUGGGCUUUCUUGGGCUCGGAAGCCAGCCCAAAUUUAUAGGCAACAUAAAAUGGGAG ((((.................................((((((...........)))))).((((((((((....)))))))))))))).((((..(((((.(....)))))).)))).. ( -28.00) >DroYak_CAF1 13689 120 - 1 UGGCAAACAACAACAAAACCAUUAACAUGAAAUUACAAGGAAUAAAUAAGGAAGAUUCCUGUUUCGGGCUUUCUUGGGCUCGGAAGCCAGCCCAAAUUUAUAGGCAACAUAAAAUGGGAG ((((.................................((((((...........)))))).((((((((((....)))))))))))))).((((..(((((.(....)))))).)))).. ( -30.00) >consensus UGGCAAACAACAACAAAACCAUUAACAUGAAAUUACAAGGAAUAAAUAAAGUAGAUUCCUGUUUCGGCCUUUCUUGGCCUCGGAAGCCAGCCCAAAUUUAUAGGCAACAUAAAAUGGCAG ((((.................................((((((...........)))))).((((((((((....)))))))))))))).((((..(((((.(....)))))).)))).. (-21.56 = -22.88 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:53 2006