Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,583,180 – 13,583,270 |
Length | 90 |
Max. P | 0.690612 |
Location | 13,583,180 – 13,583,270 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 83.33 |
Mean single sequence MFE | -22.07 |
Consensus MFE | -16.77 |
Energy contribution | -16.33 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.22 |
Mean z-score | -1.84 |
Structure conservation index | 0.76 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.690612 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13583180 90 + 22407834 UUAUCCCUUUUAAGACUUGCGAUAUUUCUCGCAACUCACUUUUUGGUUCGUCACAAGAUGCUGAAAUGAUUACGGCAUUGAUGAUGAAGC .............((.((((((......)))))).)).......(.(((((((...(((((((.........)))))))..))))))).) ( -23.80) >DroEre_CAF1 16512 90 + 1 UUAUCCUUUUUAAGACCUGAGAUGUUUUUUGCAACUCACUUUUGUGUUCGUCACAAGAUUGUGAAAUGAUUACACCAUUGAUGAUGAAGA ............(((..((((.(((.....))).))))..)))...((((((((((...(((((.....)))))...))).))))))).. ( -17.00) >DroYak_CAF1 13383 90 + 1 UUAUCCUUUCUGAAAGCGGCGAUAUUUUUUGCAACUCACUUCAAGGUUCGUCAGAAGAUGCUGAAAUGAUUACGGCAUUGAUGACGAAGA ....((((...(..((..((((......))))..))..)...))))(((((((...(((((((.........)))))))..))))))).. ( -25.40) >consensus UUAUCCUUUUUAAGACCUGCGAUAUUUUUUGCAACUCACUUUUAGGUUCGUCACAAGAUGCUGAAAUGAUUACGGCAUUGAUGAUGAAGA ..................((((......))))..............(((((((...(((((((.........)))))))..))))))).. (-16.77 = -16.33 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:51 2006