Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,582,792 – 13,582,941 |
Length | 149 |
Max. P | 0.868224 |
Location | 13,582,792 – 13,582,901 |
---|---|
Length | 109 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.96 |
Mean single sequence MFE | -39.42 |
Consensus MFE | -28.54 |
Energy contribution | -28.85 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.07 |
Mean z-score | -2.77 |
Structure conservation index | 0.72 |
SVM decision value | 0.86 |
SVM RNA-class probability | 0.868224 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13582792 109 - 22407834 AUAUUGUUGAAGGGAAGUGUUGCAA--GAUACACGCAAUCAGGAGGGCCACAGACUUUGGUGGUCUCUCAAAAUGUGUAGCACACACAAGGGGGCGUCUUUUGCGGCACUG--------- ...............((((((((((--((...((((..((..(((((((((........)))))).)))....(((((.....))))).))..)))).)))))))))))).--------- ( -39.50) >DroSec_CAF1 15764 109 - 1 AUAUUGUUGAAGGGAAGUGUUGCAA--GAUACACGCAAUCAGGAGGGCCACAGACUUUGGUGGUCUCUCCAAAAGUGUAGCACACACAAGGGGGCGUCUUUUGUGGCACUG--------- ...............(((((..(((--((...((((..((.((((((((((........)))))).))))....((((.....))))..))..)))).)))))..))))).--------- ( -40.80) >DroEre_CAF1 16141 109 - 1 AUAUUGUUGAAGGGAAGUGUUGCGA--GAUACACGCAAUCAGGAGGGCCACAGACUUCUGUGGUAUCUCAAAAUGUGUAGCAUACACAAGGGGGCGUCUUUUGUGGCACUG--------- ...............(((((..(((--((...((((..((..(((((((((((....))))))).))))....((((((...)))))).))..)))).)))))..))))).--------- ( -40.30) >DroYak_CAF1 13030 119 - 1 AUAUUGUUGAAGAGAAGUGUUGCGAGAGAUACACGCAAUCAGGAGGG-CACAGACUUCGGUGGUCUCUCAAAAUGUGUAGCAUACACAAGGGGUCGUCUUUUGUGGCACUGCAGAGCACU ....((((...(...(((((..((((((((((.(.(......(((((-.((..((....)).)))))))....((((((...)))))).).))).))))))))..))))).)..)))).. ( -37.10) >consensus AUAUUGUUGAAGGGAAGUGUUGCAA__GAUACACGCAAUCAGGAGGGCCACAGACUUCGGUGGUCUCUCAAAAUGUGUAGCACACACAAGGGGGCGUCUUUUGUGGCACUG_________ ...............((((((((((.......((((..((..(((((((((........)))))).))).....((((.....))))..))..))))...)))))))))).......... (-28.54 = -28.85 + 0.31)
Location | 13,582,823 – 13,582,941 |
---|---|
Length | 118 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.26 |
Mean single sequence MFE | -34.33 |
Consensus MFE | -28.05 |
Energy contribution | -28.17 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.06 |
Mean z-score | -2.02 |
Structure conservation index | 0.82 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.739254 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13582823 118 - 22407834 AAUGCCUGACAAGGUACACAUGUCGAACAACAUCGUGAAAAUAUUGUUGAAGGGAAGUGUUGCAA--GAUACACGCAAUCAGGAGGGCCACAGACUUUGGUGGUCUCUCAAAAUGUGUAG ..(.(((((((.(.....).))))...(((((..((....))..))))).))).).(((((....--)))))(((((.....(((((((((........)))))).)))....))))).. ( -33.50) >DroSec_CAF1 15795 118 - 1 AAUGCCUGACAAGGUACAUAUGUCGAACAACAUCGUGGAAAUAUUGUUGAAGGGAAGUGUUGCAA--GAUACACGCAAUCAGGAGGGCCACAGACUUUGGUGGUCUCUCCAAAAGUGUAG ...((((....))))((((.((.((..(((((..((....))..))))).......(((((....--))))).))))....((((((((((........)))))).))))....)))).. ( -33.30) >DroEre_CAF1 16172 118 - 1 AAUGCCUGACAAGGUACACAUGUCGAACAACAUCGUGGAAAUAUUGUUGAAGGGAAGUGUUGCGA--GAUACACGCAAUCAGGAGGGCCACAGACUUCUGUGGUAUCUCAAAAUGUGUAG ...((((....))))((((((......(((((..((....))..)))))..((((...((((((.--......)))))).......(((((((....))))))).))))...)))))).. ( -36.50) >DroYak_CAF1 13070 119 - 1 AAUGCCUGACAAGGUACACAUGUCGAACAACAUUGUGGAAAUAUUGUUGAAGAGAAGUGUUGCGAGAGAUACACGCAAUCAGGAGGG-CACAGACUUCGGUGGUCUCUCAAAAUGUGUAG ...((((....))))((((((......(((((.(((....))).)))))..((...((((..(....)..))))....))..(((((-.((..((....)).)))))))...)))))).. ( -34.00) >consensus AAUGCCUGACAAGGUACACAUGUCGAACAACAUCGUGGAAAUAUUGUUGAAGGGAAGUGUUGCAA__GAUACACGCAAUCAGGAGGGCCACAGACUUCGGUGGUCUCUCAAAAUGUGUAG ..(((((....)))))(((.(.((...(((((..((....))..)))))..)).).)))..........(((((........(((((((((........)))))).))).....))))). (-28.05 = -28.17 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:50 2006