Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,579,814 – 13,579,968 |
Length | 154 |
Max. P | 0.919887 |
Location | 13,579,814 – 13,579,930 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.64 |
Mean single sequence MFE | -27.45 |
Consensus MFE | -24.81 |
Energy contribution | -24.62 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.04 |
Mean z-score | -1.95 |
Structure conservation index | 0.90 |
SVM decision value | 1.13 |
SVM RNA-class probability | 0.919887 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13579814 116 + 22407834 GCAUUUUAUUUCAUGCU--CACUCCCUUUGCCACUCGCC-UUUUUUGUGCACAAAUUUUUAGUAAGCUGAGAAUU-UCCAUGGCGCCAUUUGGCCAUGUUUGUGCGGCCAACUAGUCCCA ((((........)))).--..........(((((.....-......))((((((((((((((....)))))))..-..((((((........))))))))))))))))............ ( -27.40) >DroSec_CAF1 12927 116 + 1 GCAUUUUAUUUCAUGCU--CACUCUCUUUGCCACUCGCC-UUUUUUAUGCACAAAUUUUUAGCCAGCUGAGAAUC-UCCAUGGCGUCAUUUGGCCAUGUUUGUGCGGCCAACUAGUCCCA ((((........)))).--.................(((-........((((((((((((((....)))))))..-..((((((........))))))))))))))))............ ( -26.00) >DroEre_CAF1 13273 115 + 1 GCAUUUUAUUUCAUGCU--CACUCCCUUUGCCACUUGC--UUUUUUAUGCACAAAUUUUUAGCAAGCUGAGAAUU-UCCAUGGCGCCAUUUGGCCAUGUUUGUGUGGCCAACUAGUCCCA ((((........)))).--..........((((..(((--........))).((((((((((....)))))))))-)...)))).....((((((((......))))))))......... ( -29.40) >DroYak_CAF1 10021 120 + 1 GCAUUUUAUUACAUGCUCUCACUCCCUUUGCCACUCGCCUUUUUUUAUGCACAAAUUUUUAGCAAGCUGAGAAUUUUCCAUGGCGCCAUUGGGCCAUGUUUGUGCGGCCAACUAGUCCCA ((((........))))....................(((.........((((((((((((((....))))))).....((((((.((...))))))))))))))))))............ ( -27.00) >consensus GCAUUUUAUUUCAUGCU__CACUCCCUUUGCCACUCGCC_UUUUUUAUGCACAAAUUUUUAGCAAGCUGAGAAUU_UCCAUGGCGCCAUUUGGCCAUGUUUGUGCGGCCAACUAGUCCCA ((((........))))................................((((((((((((((....))))))).....((((((........)))))))))))))(((......)))... (-24.81 = -24.62 + -0.19)
Location | 13,579,851 – 13,579,968 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.27 |
Mean single sequence MFE | -27.42 |
Consensus MFE | -23.44 |
Energy contribution | -23.50 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.07 |
Mean z-score | -1.54 |
Structure conservation index | 0.85 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.678950 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13579851 117 + 22407834 UUUUUUGUGCACAAAUUUUUAGUAAGCUGAGAAUU-UCCAUGGCGCCAUUUGGCCAUGUUUGUGCGGCCAACUAGUCCCACGCUUU--GAGAAACAAACCAAAAAACAAAUUUAGACCAC (((((((.((((((((((((((....)))))))..-..((((((........)))))))))))))(((......))).........--...........))))))).............. ( -25.70) >DroSec_CAF1 12964 117 + 1 UUUUUUAUGCACAAAUUUUUAGCCAGCUGAGAAUC-UCCAUGGCGUCAUUUGGCCAUGUUUGUGCGGCCAACUAGUCCCACGCUUU--GAGGCACAAACCAAAAAACAAUUUUAGACCAU ((((((.(((((((((((((((....)))))))..-..((((((........))))))))))))))(((....(((.....)))..--..))).......)))))).............. ( -28.20) >DroEre_CAF1 13309 118 + 1 UUUUUUAUGCACAAAUUUUUAGCAAGCUGAGAAUU-UCCAUGGCGCCAUUUGGCCAUGUUUGUGUGGCCAACUAGUCCCACACUUUCCCAGGCACAAACCAA-AAACAAUUUUAGACCAU .......(((..((((((((((....)))))))))-)...(((.((...((((((((......))))))))...)).)))...........)))........-................. ( -25.90) >DroYak_CAF1 10061 117 + 1 UUUUUUAUGCACAAAUUUUUAGCAAGCUGAGAAUUUUCCAUGGCGCCAUUGGGCCAUGUUUGUGCGGCCAACUAGUCCCACACUUU--GAGGCGCAAACGCA-AAACAAUUUUAGACCAU .......(((((((((((((((....))))))).....((((((.((...))))))))))))))))(((....(((.....)))..--..)))((....)).-................. ( -29.90) >consensus UUUUUUAUGCACAAAUUUUUAGCAAGCUGAGAAUU_UCCAUGGCGCCAUUUGGCCAUGUUUGUGCGGCCAACUAGUCCCACACUUU__GAGGCACAAACCAA_AAACAAUUUUAGACCAU .......(((((((((((((((....))))))).....((((((........))))))))))))))(((....(((.....)))......)))........................... (-23.44 = -23.50 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:44 2006