Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,578,606 – 13,578,722 |
Length | 116 |
Max. P | 0.515123 |
Location | 13,578,606 – 13,578,722 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 83.38 |
Mean single sequence MFE | -31.28 |
Consensus MFE | -18.76 |
Energy contribution | -21.32 |
Covariance contribution | 2.56 |
Combinations/Pair | 1.04 |
Mean z-score | -1.84 |
Structure conservation index | 0.60 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.515123 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13578606 116 + 22407834 UCCCUUGGGUCCUUCAGCGAGUGCAUGUGCUUUAGAUAUGUACAUAUGGAGCAGUUGGGGAACCUUUGCCACUUCGGCAUGGAGGAGAGUAUCCUCCAUUUUCCCGCCUGACCUUC ......((((((((((....((((((((.......))))))))...))))).((.(((((((....((((.....))))(((((((.....))))))).))))))).))))))).. ( -42.80) >DroSec_CAF1 11755 109 + 1 UCCCUUGGGUCCUUCAGCGAGUGCAUGUGCUUUAGAUAUGUACAUAUGCAGCAGUUGGGGAACCUUUGCCACUUCGGCAU-------ACUCUCCUCCAUUUUCCCGCCUGACCUUC ......(((((.....(((..((((((((.............)))))))).....((((((.....((((.....)))).-------....))).)))......)))..))))).. ( -29.12) >DroEre_CAF1 12128 96 + 1 UCCCUGGGGUCCUUCAGCAAGUGCAUGUGCUUUAGAUA--------UGCAGCAGUUGA-GAACCUUUGCCUCUUCGGCAU-------CCUCU----CAUUUUCCUGCCUGACCUUC .....((((((..........(((((((.......)))--------))))((((.(((-((.....((((.....)))).-------..)))----)).....))))..)))))). ( -27.10) >DroYak_CAF1 8893 96 + 1 UCCCUGGGGUCCUUCAGCGAGUGCAUGUGCUUUAGAUA--------UGCAGCUGUUGG-GAACCUUUGCCUCUUCGGCAU-------CCUCU----CAUUUUCCUGCCUGACCUUU .....((((((...(((.((((((((((.......)))--------)))).....(((-((.....((((.....)))).-------..)))----))..))))))...)))))). ( -26.10) >consensus UCCCUGGGGUCCUUCAGCGAGUGCAUGUGCUUUAGAUA________UGCAGCAGUUGG_GAACCUUUGCCACUUCGGCAU_______ACUCU____CAUUUUCCCGCCUGACCUUC ......((((((((((((...((((((((.............))))))))...)))))))......((((.....))))..............................))))).. (-18.76 = -21.32 + 2.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:42 2006