Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,577,628 – 13,577,745 |
Length | 117 |
Max. P | 0.877978 |
Location | 13,577,628 – 13,577,745 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 92.87 |
Mean single sequence MFE | -27.18 |
Consensus MFE | -21.02 |
Energy contribution | -20.64 |
Covariance contribution | -0.38 |
Combinations/Pair | 1.06 |
Mean z-score | -1.86 |
Structure conservation index | 0.77 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.602416 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13577628 117 + 22407834 UUUUUUUUCUGCAUUUUUUGCCUUUGCCUUUAGGCCGCCAUAUGUGGGCUGU--AUGGAUAAACGAGCAAUUACGAUUAAUUGCAUUUGAUAAAAUGCCAUUAAAAAAUGUAAAACAGA .........(((((((((((((((((((..(((.((((.....)))).))).--..)).)))).).))))......(((((.((((((....)))))).)))))))))))))....... ( -28.30) >DroSec_CAF1 10796 114 + 1 UUU--UUUCUGCAUUUUUUGCCUUUGCCUUUGGGCCGCCAUAUGUGGGCUGU--AUGGAUAAACGAGCAAUUACGAUUAAUUGCGUUUGAUAAAAUGCCAUUAA-AAAUGUAAAACAGA ...--..((((......(((((((((((..(((.((((.....)))).))).--..)).)))).).))))(((((.(((((.((((((....)))))).)))))-...)))))..)))) ( -25.80) >DroEre_CAF1 11168 111 + 1 UU--UUUUCUGUAUUUUU-GC---UGCCUUUAGGCCGCCAUAUGUGGGCUGU--AUGGAUAAACGAGCAAUUACGAUUAAUUGCAUUUGAUAAAAUGCCAUUAAAAAAUGUAAAACAGA ..--...(((((....((-((---((((....)))..((((((.......))--)))).......)))))(((((.(((((.((((((....)))))).)))))....))))).))))) ( -27.10) >DroYak_CAF1 7905 114 + 1 UUU-UUUUCUGUAUUUUU-GC---UGCCUUUAGGCCGCCAUAUGUGGACUGUAUAUGGAUAAACGGGCAAUUACGAUUAAUUGCAUUUGAUAAAAUGCCAUUAAAAAAUGUAAAACAGA ...-...(((((....((-((---((((....)))..(((((((.......))))))).......)))))(((((.(((((.((((((....)))))).)))))....))))).))))) ( -27.50) >consensus UUU_UUUUCUGCAUUUUU_GC___UGCCUUUAGGCCGCCAUAUGUGGGCUGU__AUGGAUAAACGAGCAAUUACGAUUAAUUGCAUUUGAUAAAAUGCCAUUAAAAAAUGUAAAACAGA .......((((........((.....((..(((.((((.....)))).))).....))........))..(((((.(((((.((((((....)))))).)))))....)))))..)))) (-21.02 = -20.64 + -0.38)
Location | 13,577,628 – 13,577,745 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 92.87 |
Mean single sequence MFE | -23.20 |
Consensus MFE | -19.66 |
Energy contribution | -19.23 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.08 |
Mean z-score | -2.01 |
Structure conservation index | 0.85 |
SVM decision value | 0.90 |
SVM RNA-class probability | 0.877978 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13577628 117 - 22407834 UCUGUUUUACAUUUUUUAAUGGCAUUUUAUCAAAUGCAAUUAAUCGUAAUUGCUCGUUUAUCCAU--ACAGCCCACAUAUGGCGGCCUAAAGGCAAAGGCAAAAAAUGCAGAAAAAAAA (((((.((((.....(((((.((((((....)))))).)))))..))))(((((...........--...(((.......))).(((....)))...))))).....)))))....... ( -24.00) >DroSec_CAF1 10796 114 - 1 UCUGUUUUACAUUU-UUAAUGGCAUUUUAUCAAACGCAAUUAAUCGUAAUUGCUCGUUUAUCCAU--ACAGCCCACAUAUGGCGGCCCAAAGGCAAAGGCAAAAAAUGCAGAAA--AAA ...........(((-((....(((((((.......(((((((....)))))))..((((......--...(((.......))).(((....)))..))))..)))))))..)))--)). ( -22.60) >DroEre_CAF1 11168 111 - 1 UCUGUUUUACAUUUUUUAAUGGCAUUUUAUCAAAUGCAAUUAAUCGUAAUUGCUCGUUUAUCCAU--ACAGCCCACAUAUGGCGGCCUAAAGGCA---GC-AAAAAUACAGAAAA--AA (((((.((((.....(((((.((((((....)))))).)))))..))))(((((...........--...(((.......))).(((....))))---))-))....)))))...--.. ( -23.70) >DroYak_CAF1 7905 114 - 1 UCUGUUUUACAUUUUUUAAUGGCAUUUUAUCAAAUGCAAUUAAUCGUAAUUGCCCGUUUAUCCAUAUACAGUCCACAUAUGGCGGCCUAAAGGCA---GC-AAAAAUACAGAAAA-AAA (((((.((((.....(((((.((((((....)))))).)))))..))))((((........((((((.........))))))..(((....))).---))-))....)))))...-... ( -22.50) >consensus UCUGUUUUACAUUUUUUAAUGGCAUUUUAUCAAAUGCAAUUAAUCGUAAUUGCUCGUUUAUCCAU__ACAGCCCACAUAUGGCGGCCUAAAGGCA___GC_AAAAAUACAGAAAA_AAA (((((.((.((((....))))((............(((((((....))))))).................(((.......))).(((....)))....))....)).)))))....... (-19.66 = -19.23 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:41 2006