Locus 4761

Sequence ID 2L_DroMel_CAF1
Location 13,576,725 – 13,576,841
Length 116
Max. P 0.935723
window7535

overview

Window 5

Location 13,576,725 – 13,576,841
Length 116
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 90.99
Mean single sequence MFE -24.11
Consensus MFE -19.80
Energy contribution -20.80
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -1.86
Structure conservation index 0.82
SVM decision value 1.25
SVM RNA-class probability 0.935723
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13576725 116 + 22407834
GUUACCCCCAAAUUGCUUGCUAUAAAUCGAAUCUAAGACAACA----UACUGUUCCACUUAAAUCGUUAAGAAAUUGGCUAUUAAUUUGCCAGCUUGACAUUUGAACUUAGCAUGCAGUG
...........(((((.(((((....((((((.((((..(((.----....)))...))))....((((((....((((.........)))).))))))))))))...))))).))))). ( -26.80)
>DroSec_CAF1 9892 120 + 1
GUUACCCCCAAAUUGCUUGCUAUAAAUCCAAUCUAAGACAACAUACAUACUGUUCCACUUAAAUCGUUAAGAAAUUGGCUAUUAAUUUGCCAGCUUGACAUUUGAACUUAGCAUGCAGAG
............((((.(((((.................((((.......))))....((((((.((((((....((((.........)))).))))))))))))...))))).)))).. ( -22.60)
>DroSim_CAF1 9646 120 + 1
CUUACCCCCAAAUUGCUUGCUAUAAAUCCAAUCUAAGACAACAUACAUACUGUUCCACUUAAAUCGUUAAGAAAUUGGCUAUUAAUUUGCCAGCUUGACAUUUGAACUUAGCAUGCAGUG
...........(((((.(((((.................((((.......))))....((((((.((((((....((((.........)))).))))))))))))...))))).))))). ( -23.90)
>DroEre_CAF1 10292 116 + 1
GUUACCCCGAAAUUGCUUGCUAUAAAUCCCCUCUAAGUCAACA----UAUUGUUCCACUUAAAUCAGUAACUGAUUGGCUAUUAAUUUGCCAGCUUGGCCUUUGAACUUAGCAUGCAGUG
...........(((((.(((((..........((((((.....----..............((((((...))))))(((.........))).))))))..........))))).))))). ( -23.85)
>DroYak_CAF1 6989 112 + 1
--UA-UCCGAAAUUGCUUGCUAUAAAUCCAAUCUAAGACAACA----UAC-GUUCCACUUAAAUCGUUAAGAGAUUGGCUAUUAAUUUGCCAGCUUGACAUUUGAACUUAGCAUGCAGUG
--..-......(((((.(((((..............(((....----...-)))....((((((.((((((....((((.........)))).))))))))))))...))))).))))). ( -23.40)
>consensus
GUUACCCCCAAAUUGCUUGCUAUAAAUCCAAUCUAAGACAACA____UACUGUUCCACUUAAAUCGUUAAGAAAUUGGCUAUUAAUUUGCCAGCUUGACAUUUGAACUUAGCAUGCAGUG
...........(((((.(((((...........((((..((((.......))))...))))....((((((...(((((.........))))))))))).........))))).))))). (-19.80 = -20.80 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:39 2006