Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,574,908 – 13,575,017 |
Length | 109 |
Max. P | 0.991371 |
Location | 13,574,908 – 13,575,017 |
---|---|
Length | 109 |
Sequences | 4 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 94.29 |
Mean single sequence MFE | -38.47 |
Consensus MFE | -35.17 |
Energy contribution | -35.91 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.00 |
Mean z-score | -3.34 |
Structure conservation index | 0.91 |
SVM decision value | 2.26 |
SVM RNA-class probability | 0.991371 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13574908 109 + 22407834 GCAAAUGGCGACGUCUUGUCGGCCGUUGAAUGCCGCAUUUCAUUAACUAGCACAACGGCAUCGCCAAGUGCAACUGCAACUGCAUCCUGCAUUCUGCAGUGUGCAUUGU (((..((((((((......))(((((((..(((................)))))))))).))))))..)))....((((.((((..((((.....))))..)))))))) ( -41.89) >DroSec_CAF1 8118 109 + 1 GCAAAUGGCGACGUCUUGUCGGCCGUUGAAUGCCGCAUUUCAUUAACUAGCACAACGGCAUCGCCAACUGCAACUGCAACUGCAUCCUGCAUUCUGCAGUGUGCAUUGU (((..((((((((......))(((((((..(((................)))))))))).))))))..)))....((((.((((..((((.....))))..)))))))) ( -40.79) >DroEre_CAF1 8587 103 + 1 CCAAAUGGCGACGUCUUGUCGGCCGAUGAAUGCCGCAUUUCAUUAACUAGCACAACGGCAUCGCCAACUG------CAACUGCAUCCUGCAUUCUGCAGUGUGCAUUGU .....((((((.((((((((((..((((((........))))))..)).).)))).))).))))))...(------(((.((((..((((.....))))..)))))))) ( -34.70) >DroYak_CAF1 5259 103 + 1 CCAAAUGGCGACGUCUUGUCGGCCGUUGAAUGCCGCAUUUCAUUAACUAGCACAACGGCAUCGCCAACUG------CAACUGCAUCCUGCAUUCAGCAGUGUGCAUUGU .....((((((((......))(((((((..(((................)))))))))).))))))...(------(((.((((..((((.....))))..)))))))) ( -36.49) >consensus CCAAAUGGCGACGUCUUGUCGGCCGUUGAAUGCCGCAUUUCAUUAACUAGCACAACGGCAUCGCCAACUG______CAACUGCAUCCUGCAUUCUGCAGUGUGCAUUGU (((..((((((((......))(((((((..(((................)))))))))).))))))..))).....(((.((((..((((.....))))..))))))). (-35.17 = -35.91 + 0.75)
Location | 13,574,908 – 13,575,017 |
---|---|
Length | 109 |
Sequences | 4 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 94.29 |
Mean single sequence MFE | -39.20 |
Consensus MFE | -36.47 |
Energy contribution | -36.98 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -2.56 |
Structure conservation index | 0.93 |
SVM decision value | 2.08 |
SVM RNA-class probability | 0.987365 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13574908 109 - 22407834 ACAAUGCACACUGCAGAAUGCAGGAUGCAGUUGCAGUUGCACUUGGCGAUGCCGUUGUGCUAGUUAAUGAAAUGCGGCAUUCAACGGCCGACAAGACGUCGCCAUUUGC .(((((((..((((.....))))..)))).))).....(((..((((((((((((((((((.(((.....)))..))))..))))))).........)))))))..))) ( -40.20) >DroSec_CAF1 8118 109 - 1 ACAAUGCACACUGCAGAAUGCAGGAUGCAGUUGCAGUUGCAGUUGGCGAUGCCGUUGUGCUAGUUAAUGAAAUGCGGCAUUCAACGGCCGACAAGACGUCGCCAUUUGC .(((((((..((((.....))))..)))).))).....((((.((((((((((((((((((.(((.....)))..))))..))))))).........))))))).)))) ( -40.50) >DroEre_CAF1 8587 103 - 1 ACAAUGCACACUGCAGAAUGCAGGAUGCAGUUG------CAGUUGGCGAUGCCGUUGUGCUAGUUAAUGAAAUGCGGCAUUCAUCGGCCGACAAGACGUCGCCAUUUGG .(((((((..((((.....))))..)))).)))------(((.(((((((((.((((.((..((.((((........)))).))..))))))..).)))))))).))). ( -37.30) >DroYak_CAF1 5259 103 - 1 ACAAUGCACACUGCUGAAUGCAGGAUGCAGUUG------CAGUUGGCGAUGCCGUUGUGCUAGUUAAUGAAAUGCGGCAUUCAACGGCCGACAAGACGUCGCCAUUUGG .(((((((..((((.....))))..)))).)))------(((.((((((((((((((((((.(((.....)))..))))..))))))).........))))))).))). ( -38.80) >consensus ACAAUGCACACUGCAGAAUGCAGGAUGCAGUUG______CAGUUGGCGAUGCCGUUGUGCUAGUUAAUGAAAUGCGGCAUUCAACGGCCGACAAGACGUCGCCAUUUGC .(((((((..((((.....))))..)))).)))......(((.((((((((((((((((((.(((.....)))..))))..))))))).........))))))).))). (-36.47 = -36.98 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:32 2006