Locus 4756

Sequence ID 2L_DroMel_CAF1
Location 13,573,790 – 13,573,900
Length 110
Max. P 0.568881
window7526

overview

Window 6

Location 13,573,790 – 13,573,900
Length 110
Sequences 3
Columns 110
Reading direction reverse
Mean pairwise identity 86.89
Mean single sequence MFE -20.57
Consensus MFE -18.24
Energy contribution -18.13
Covariance contribution -0.11
Combinations/Pair 1.08
Mean z-score -1.42
Structure conservation index 0.89
SVM decision value 0.07
SVM RNA-class probability 0.568881
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13573790 110 - 22407834
GAGUCGAGUCGUGCGAUGCCAAGUGUUGCACAAAAAAAAAAAAAACACUAAAAUGAAAACACAGACACACAUGGCAUGUAUAUAUGUAGAUAAAGGAAACCCAGAGAUGC
..(((..((((((((((((...)))))))))..............((......))........))).......(((((....))))).)))...((....))........ ( -17.20)
>DroSim_CAF1 6599 100 - 1
GAGUCGAGUCGUGCGAUGCCAAGUGUUGCACA------AAAAAAACACAAAAAUGAAAACGCAGACACACAUGGCAUGU----AUGUAGAUAAAGGAAACCCAGAGAUGC
..(((....(((((.((((((.(((((((...------......................)))...)))).))))))))----)))..)))...((....))........ ( -21.51)
>DroEre_CAF1 7468 104 - 1
GAGUCGAGUCGUGCGAUGCCAAGUGUUGCACAAAAA------AACUACAAAAAUGGAAACACAGACACACAUGGCAUGUACAUAUGCAGAUAAAGGAAACCCACAGAUGC
..(((..((((((((((((...))))))))).....------...........((....))..))).......(((((....))))).)))...((....))........ ( -23.00)
>consensus
GAGUCGAGUCGUGCGAUGCCAAGUGUUGCACAAAAA__AAAAAAACACAAAAAUGAAAACACAGACACACAUGGCAUGUA_AUAUGUAGAUAAAGGAAACCCAGAGAUGC
..(((..((((((((((((...)))))))))......................((....))..))).......(((((....))))).)))...((....))........ (-18.24 = -18.13 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:29 2006