Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,573,230 – 13,573,390 |
Length | 160 |
Max. P | 0.870948 |
Location | 13,573,230 – 13,573,350 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.47 |
Mean single sequence MFE | -35.73 |
Consensus MFE | -32.14 |
Energy contribution | -31.82 |
Covariance contribution | -0.31 |
Combinations/Pair | 1.12 |
Mean z-score | -1.78 |
Structure conservation index | 0.90 |
SVM decision value | 0.81 |
SVM RNA-class probability | 0.856134 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13573230 120 - 22407834 ACAAUGGGCGCUAGGGGGUGUGGCAGCUGCCAAAAAGGGAGUGGCUAAAUCCACCAUGGCAGCAGAUUAGCAUAACAAAAGUAAAUGACGACUGCUAAAUGUGUCAAUUUUGCGACACGA .........((((((((((.((((.(((.((.....)).))).)))).)))).)).))))(((((.((..(((.((....))..)))..)))))))...((((((........)))))). ( -37.70) >DroSec_CAF1 6471 120 - 1 ACAAUGGGCGCUAGGGGGCGUGGCAGCUGCCAAAAAGGGAGUGGCUAAAUCCACCAUGGCAGCAGAUUAGCAUAACAAAAGUAAAUGACGACUGCUAAAUGUGUCAAUUCUGCGACACGA .........(((((((((..((((.(((.((.....)).))).))))..))).)).))))(((((.((..(((.((....))..)))..)))))))...((((((........)))))). ( -36.70) >DroSim_CAF1 6048 120 - 1 ACAAUGGGCGCCAGGGGGCGUGGCAGCUGCCAAAAAGGGAGUGGCUAAAUCCACCAUGGCAGCAGAUUAGCAUAACAAAAGUAAAUGACGACUGCUAAAUGUGUCAAUUCUGCGACACGA .........(((((((((..((((.(((.((.....)).))).))))..))).)).))))(((((.((..(((.((....))..)))..)))))))...((((((........)))))). ( -39.00) >DroYak_CAF1 3580 119 - 1 GCAAUGGGCGACAAGGGGCGUGGCAGUUGCCAGAA-GGGAGUGGCUGGAUCCACCAUGGCAGCAGAUUAGCAUAACAAAAGUAAAUGACGACUGCUAAAUGUGUCAGUUUUACGAAGCGA ((.(((.((.((.......)).)).(((((((...-..(.((((......))))).))))))).......))).......(((((((((.((........))))))..)))))...)).. ( -29.50) >consensus ACAAUGGGCGCCAGGGGGCGUGGCAGCUGCCAAAAAGGGAGUGGCUAAAUCCACCAUGGCAGCAGAUUAGCAUAACAAAAGUAAAUGACGACUGCUAAAUGUGUCAAUUCUGCGACACGA .........((((.((((..((((..((.((.....)).))..))))...)).)).))))(((((.((..(((.((....))..)))..)))))))...((((((........)))))). (-32.14 = -31.82 + -0.31)
Location | 13,573,270 – 13,573,390 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.86 |
Mean single sequence MFE | -38.34 |
Consensus MFE | -34.33 |
Energy contribution | -34.95 |
Covariance contribution | 0.62 |
Combinations/Pair | 1.07 |
Mean z-score | -1.93 |
Structure conservation index | 0.90 |
SVM decision value | 0.87 |
SVM RNA-class probability | 0.870948 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13573270 120 - 22407834 CAGCAAAGCGUUAUAAUAGGGCUUAUUAGGGUUACUCCCGACAAUGGGCGCUAGGGGGUGUGGCAGCUGCCAAAAAGGGAGUGGCUAAAUCCACCAUGGCAGCAGAUUAGCAUAACAAAA .........(((((......(((((((.(((.....)))...)))))))((((((((((.((((.(((.((.....)).))).)))).)))).)).)))).((......))))))).... ( -39.60) >DroSec_CAF1 6511 120 - 1 CAGCAAAGCGUUAUAAUAGGGCUUAUUAGGGUUACCCCCGACAAUGGGCGCUAGGGGGCGUGGCAGCUGCCAAAAAGGGAGUGGCUAAAUCCACCAUGGCAGCAGAUUAGCAUAACAAAA ..((...(((((....(((.(((((((.(((.....)))...))))))).)))...))))).)).(((((((.....(((.........)))....)))))))................. ( -40.10) >DroSim_CAF1 6088 120 - 1 CAGCAAAGCGUUAUAAUAGGGCUUAUUAGGGUUACCCCCGACAAUGGGCGCCAGGGGGCGUGGCAGCUGCCAAAAAGGGAGUGGCUAAAUCCACCAUGGCAGCAGAUUAGCAUAACAAAA .........(((((......(((((((.(((.....)))...)))))))(((((((((..((((.(((.((.....)).))).))))..))).)).)))).((......))))))).... ( -40.40) >DroYak_CAF1 3620 118 - 1 CAGCAAAGCGUUAUAAUAGGGCUUAUUAGGGUUACC-CCGGCAAUGGGCGACAAGGGGCGUGGCAGUUGCCAGAA-GGGAGUGGCUGGAUCCACCAUGGCAGCAGAUUAGCAUAACAAAA ..((...(((((........(((((((.(((....)-))...))))))).......))))).)).(((((((...-..(.((((......))))).)))))))................. ( -33.26) >consensus CAGCAAAGCGUUAUAAUAGGGCUUAUUAGGGUUACCCCCGACAAUGGGCGCCAGGGGGCGUGGCAGCUGCCAAAAAGGGAGUGGCUAAAUCCACCAUGGCAGCAGAUUAGCAUAACAAAA ..((...(((((....(((.(((((((.(((.....)))...))))))).)))...))))).)).(((((((.....(((.........)))....)))))))................. (-34.33 = -34.95 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:25 2006