Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,571,682 – 13,571,800 |
Length | 118 |
Max. P | 0.529993 |
Location | 13,571,682 – 13,571,800 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.32 |
Mean single sequence MFE | -35.42 |
Consensus MFE | -30.02 |
Energy contribution | -30.38 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.12 |
Mean z-score | -1.26 |
Structure conservation index | 0.85 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.529993 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13571682 118 + 22407834 GUUG--UGUUUCAGCAGGGGUCUUGCAUGCAAGGCACAACAAAAUGGCAUUUGAAACAUGUGUCAAGUUCCAUGCACUUGUUUAUGUUUGUCGGCCAAAUUUCCCGGCCCAAGGCCCCGC ((((--.....)))).((((((((((((((((((((........(((.((((((........)))))).)))))).)))))..)))......((((.........))))))))))))).. ( -39.50) >DroSec_CAF1 4989 117 + 1 -UUG--UGUUUCAGCAGGGGUCUUGCAUGCAAGGCACAACAAAAUGGCAUUUGAAACAUGUGUCAAGUUCCAUGCACUUGUUUAUGUUUGUCGGCCAAAUUUCCCGGCCCAAGGCCCCGC -.((--(......)))((((((((((((((((((((........(((.((((((........)))))).)))))).)))))..)))......((((.........))))))))))))).. ( -37.20) >DroSim_CAF1 4547 117 + 1 -UUG--UGUUUCAGCAGGGGUCUUGCAUGCAAGGAACAACAAAAUGGCAUUUGAAACAUGUGUCAAGUUCCAUGCACUUGUUUAUGUUUGUCGGCCAAAUUUCCCGGCCCAAGGCCCCGC -.((--(......)))(((((((((((.(((..((((((....((((.((((((........)))))).))))....)))))).))).))..((((.........))))))))))))).. ( -38.70) >DroEre_CAF1 5439 115 + 1 -UUG--UG-UUCAGCAUGGGUC-UGCAUGCGAGGUGCAACAAAAUGGCAUUUGAAACAUGUGUCAAGUUCCAUGCACUUGUUUAUGCUUGUCGGCCAAAUUUCCCGCCCCAAGGCCCCAC -..(--((-.....)))(((((-((((((..(((((((......(((.((((((........)))))).))))))))))...))))).....(((..........)))...))))))... ( -30.70) >DroYak_CAF1 2115 117 + 1 -UUGUGUG-UUCAGCAGGGGUC-UGCAUGCAAGGCACAACAAAAUGGCAUUUGAAACAUGUGUCAAGUUCCAUGCACUUGUUUAUGUUUGUCGGCCGAAUUUCCCGCUCCAAGGCCCCAC -...(((.-....)))((((((-(....((..(......)....((((.....(((((((...(((((.......)))))..)))))))....))))........))....))))))).. ( -31.00) >consensus _UUG__UGUUUCAGCAGGGGUCUUGCAUGCAAGGCACAACAAAAUGGCAUUUGAAACAUGUGUCAAGUUCCAUGCACUUGUUUAUGUUUGUCGGCCAAAUUUCCCGGCCCAAGGCCCCGC ................(((((((((((.(((..(.((((....((((.((((((........)))))).))))....)))))..))).))..((((.........))))))))))))).. (-30.02 = -30.38 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:18 2006