Locus 4749

Sequence ID 2L_DroMel_CAF1
Location 13,570,386 – 13,570,503
Length 117
Max. P 0.523644
window7512

overview

Window 2

Location 13,570,386 – 13,570,503
Length 117
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 83.71
Mean single sequence MFE -25.15
Consensus MFE -15.88
Energy contribution -16.52
Covariance contribution 0.64
Combinations/Pair 1.19
Mean z-score -1.79
Structure conservation index 0.63
SVM decision value -0.02
SVM RNA-class probability 0.523644
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13570386 117 + 22407834
UAGGGAUAAGCAUCUUAACCUUUUUAUGAGC---CUGAGAUGCAGACCUUAUACAAGAGGAAACCUACAUACCUACUGCCACUACUUUUCCUGCCUCGAAAUUGUCCUUUUAAAUUGAUU
.((((((((((((((((..(((.....))).---.))))))))...((((......)))).........................................))))))))........... ( -23.10)
>DroSec_CAF1 3708 116 + 1
UAGGGAUAAGCAUCUUAACCUUUUUAUGAGAUGCCUCAGAUGCAGGCUGUACACAAGAUGAAAACUA----CCUACUGCCACAACUUUCCUUGCCUCGAAAUUGUCCUUUCAAAUUGAUU
.((((((((((((((((.........))))))))....((.((((((.(((....((.(....))).----..))).)))...........))).))....))))))))........... ( -22.50)
>DroSim_CAF1 3258 113 + 1
UAGGGAUAAGCAUCUUAACCUUUUUAUAACA---CUGAGAUGCAGGCUGUACACAAGAUGAAAACUA----CUUACUGCCACAACUUUCCCUGCCUCGAAAUUGUCCUUUUAAAUUGAUU
((((((...((((((((..............---.)))))))).(((.(((....((.(....))).----..))).))).......))))))........................... ( -22.06)
>DroEre_CAF1 4156 109 + 1
UAGGGAUAAGCAUCUUAACCUUCUUAUGACU---UUGAGAUGCAGGCUGUAUUUCAAGGGAAUACUA----CCUACUGGCA---CUUUCCCUGCUUCGCAAUUGUUCUU-UAAAUUGAUU
((((((...(((((((((...((....))..---)))))))))(((..((((((.....))))))..----))).......---...)))))).....(((((......-..)))))... ( -29.70)
>DroYak_CAF1 195 109 + 1
UAGGGAUAAGCAUCUUAACCUUUUUAUGACU---UUGAGAUGCUGGCUGUAUUUCAAGGGAAAACUA----CCUACUGGCA---CUUUCCCUGCUUCGAAAUUGUCCUU-UAAAUUGAUU
.(((((((((((((((((..((.....))..---))))))))))......(((((.(((((((....----((....))..---.))))))).....))))))))))))-.......... ( -28.40)
>consensus
UAGGGAUAAGCAUCUUAACCUUUUUAUGACA___CUGAGAUGCAGGCUGUAUACAAGAGGAAAACUA____CCUACUGCCAC_ACUUUCCCUGCCUCGAAAUUGUCCUUUUAAAUUGAUU
.((((((((((((((((..................))))))))((((.........(((((((......................))))))))))).....))))))))........... (-15.88 = -16.52 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:14 2006