Locus 4747

Sequence ID 2L_DroMel_CAF1
Location 13,568,975 – 13,569,095
Length 120
Max. P 0.849211
window7509

overview

Window 9

Location 13,568,975 – 13,569,095
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 95.14
Mean single sequence MFE -18.50
Consensus MFE -15.79
Energy contribution -16.54
Covariance contribution 0.75
Combinations/Pair 1.00
Mean z-score -2.15
Structure conservation index 0.85
SVM decision value 0.78
SVM RNA-class probability 0.849211
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13568975 120 + 22407834
UCCAAUUUUUCCCUAUCAAACAUUCACAGAGCUCUAAUUUUAACUUUGUUUUCGUUGAUUUUCCUUUCAACCCCACAAUUUUUUGCAAUCAGCCAAUUUUUGAGGAUUGCCUGUGAAAAG
......................(((((((................((((....(((((........)))))...))))......((((((..(........)..)))))))))))))... ( -21.00)
>DroSec_CAF1 2353 120 + 1
ACCAAUUUCUCCCUAUCAAACAUUCACAGAGCUCUAAUUUUAACUUUGUUUUCGUUGAUUUUCCUUUCAACCCCACAAUUUUUUGCAAUCAGCCAAUUUUUCAGGAUUGCCUGCGAAAAG
.........................((((((............))))))....(((((........)))))........((((((((..(((((.........)).)))..)))))))). ( -16.20)
>DroSim_CAF1 1885 120 + 1
ACAAAUUUUUUCCUAUCAAACAUUCACAGAGCUCUAAUUUUAACUUUGUUUUCGUUGAUUUUCCUUUCAACCCCACAAUUUUUUGCAAUCAGCCAAUUUUUCAGGAUUGCCUGCGAAAAG
.........................((((((............))))))....(((((........)))))........((((((((..(((((.........)).)))..)))))))). ( -16.20)
>DroEre_CAF1 2705 120 + 1
UUCAAUUUUUCCCUAUCAAACAUUCACAGAGCUCUAAUUUUAACUUUGUUUUCGUUGAUUUUCUCUUCAACCCCACAAUUUUUUGCAAUCAGCAAAUUUUUCAGCAUUGCCUGUGAAAAG
......................(((((((.((.............((((....(((((........)))))...))))...(((((.....)))))............)))))))))... ( -20.60)
>consensus
ACCAAUUUUUCCCUAUCAAACAUUCACAGAGCUCUAAUUUUAACUUUGUUUUCGUUGAUUUUCCUUUCAACCCCACAAUUUUUUGCAAUCAGCCAAUUUUUCAGGAUUGCCUGCGAAAAG
......................(((((((................((((....(((((........)))))...))))......((((((..............)))))))))))))... (-15.79 = -16.54 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:11 2006