Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,567,808 – 13,567,927 |
Length | 119 |
Max. P | 0.506757 |
Location | 13,567,808 – 13,567,927 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.30 |
Mean single sequence MFE | -38.75 |
Consensus MFE | -26.42 |
Energy contribution | -26.43 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.95 |
Structure conservation index | 0.68 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.506757 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13567808 119 + 22407834 GGGCCAGCAAACGUUUUUAUGCUUGGUAAUUAGGAUGUUUGCUGUGCCAAGAGGGGAGGAGGGGGUGGUCCACAUGACC-CACCCACGAAUAACUCAGUUAUCAGACACGAGCUGGCUAA .(((((((....((......))(((((((((..(.((((((((.(.((......)).).)).((((((..(....)..)-))))).)))))).)..)))))))))......))))))).. ( -40.10) >DroSec_CAF1 1227 113 + 1 GGGCCAGCAAACGUUUUUAUGCUCGGUAAUUAGGAUGUUGGCAGUGCCAA-AGG-----GCGGGUUGGACCACAUGACC-CACCCACGAAUAACUCAGUUAUCAGACACGAGCUGGCUAA .(((((((....((......))..(((((((..(...(((((...)))))-.((-----(.((((((.......)))))-).)))........)..)))))))........))))))).. ( -38.70) >DroSim_CAF1 732 115 + 1 GGGCCAGCAAACGUUUUUAUGCUCGGUAAUUAGGAUGUUGUCAGUGCCAAAAGG-----GCGGGUUGGACCACAUGACCCCACCCACGAAUAACUCAGUUAUCAGACACGAGCUGGCUAA .(((((((....((......))..((((((...((.(((((..(((((.....)-----))((((.((..(....)..)).))))))..))))))).))))))........))))))).. ( -36.10) >DroEre_CAF1 1589 108 + 1 GGGCCAGCAAACGUUUUUAUGCUGGGUAAUUAGGAUGUUGGCCGUGCCAA-----------GGGGUGGACAACAUGACC-CACCCACGAAUAACUCAGUUAUCAGACACGAGCUGGCUAA .(((((((....((((....(((((((.(((.(....(((((...)))))-----------.((((((..........)-))))).).))).)))))))....))))....))))))).. ( -40.10) >consensus GGGCCAGCAAACGUUUUUAUGCUCGGUAAUUAGGAUGUUGGCAGUGCCAA_AGG_____GCGGGGUGGACCACAUGACC_CACCCACGAAUAACUCAGUUAUCAGACACGAGCUGGCUAA .(((((((.((((((((.((........)).))))))))....(((.(.............(((..((.........))...)))..((.((((...)))))).).)))..))))))).. (-26.42 = -26.43 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:10 2006