Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,565,511 – 13,565,631 |
Length | 120 |
Max. P | 0.972961 |
Location | 13,565,511 – 13,565,631 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.11 |
Mean single sequence MFE | -36.92 |
Consensus MFE | -35.66 |
Energy contribution | -35.54 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.06 |
Mean z-score | -1.45 |
Structure conservation index | 0.97 |
SVM decision value | 1.70 |
SVM RNA-class probability | 0.972961 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13565511 120 - 22407834 UUGAAUAUUGUGUCGAUUGCGUGGGCGUAACCGGGGGGGAAAUGCUAUUAACUGGUCAUACCCCACGGAAUAGCAAUGUUUUUUUUCCGCUUUUUUUUAUGACCCCUCGCUUCAAGGCAC .........(((((....(((.((((((((.(((..(((((((((((((...(((.......)))...)))))))...))))))..))).......))))).)))..))).....))))) ( -35.20) >DroSec_CAF1 21945 117 - 1 UUGAAUAUUGUGUCGAUUGCGUGGGCGUAACCGGGGGGGAAAUGCUAUUAACUGGUCAUAUCCCACGGAAUAGCAACGUUUU-UUUCCGCUUU--UUUAUGACCCCUCGCUUCAAGGCAC .........(((((....(((.((((((((.(((..(((((.(((((((...(((.......)))...)))))))...))))-)..)))....--.))))).)))..))).....))))) ( -36.80) >DroSim_CAF1 29508 118 - 1 UUGAAUAUUGUGUCGAUUGCGUGGGCGUAACCGGGGGGGAAAUGCUAUUAACUGGUCAUACCCCACGGAAUAGCAACGUUUUUUUUCCGCUUU--UUUAUGACCCCUCGCUUCAAGGCAC .........(((((....(((.((((((((.(((..(((((((((((((...(((.......)))...)))))))...))))))..)))....--.))))).)))..))).....))))) ( -36.50) >DroEre_CAF1 21329 117 - 1 UGGAAUAUUGUGUCGAUUGCGUGGGCGUAACCGGGGGGGAAAUGCUAUUAACUGGUCAUACCCCACGGAAUAGCGCAGUUUU-UUUCCGCCUU--UUCAUGACCCCUCGCUCCAAGGCAC .((((.(((((((..(((.((((((.((((((((...((.....)).....)))))..))))))))).))).)))))))...-.))))(((((--....(((....)))....))))).. ( -39.30) >DroYak_CAF1 19821 117 - 1 UUGAAUAUUGUGUCGAUUGCGUGGGCGUAACCGGGGGGGAAAUGCUAUUAACUGGUCAUACCCCACGGAAUAGCACUGUUUU-UUUCCGCUUU--UUUAUGACCCUUCGCUCCAAGGCAC .........(((((....(((.((((((((.(((..(((((.(((((((...(((.......)))...)))))))...))))-)..)))....--.))))).)))..))).....))))) ( -36.80) >consensus UUGAAUAUUGUGUCGAUUGCGUGGGCGUAACCGGGGGGGAAAUGCUAUUAACUGGUCAUACCCCACGGAAUAGCAACGUUUU_UUUCCGCUUU__UUUAUGACCCCUCGCUUCAAGGCAC .........(((((....(((.((((((((..((((.((((((((((((...(((.......)))...)))))))........))))).))))...))))).)))..))).....))))) (-35.66 = -35.54 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:04 2006