Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,559,889 – 13,560,004 |
Length | 115 |
Max. P | 0.791066 |
Location | 13,559,889 – 13,560,004 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 81.54 |
Mean single sequence MFE | -38.46 |
Consensus MFE | -21.50 |
Energy contribution | -22.74 |
Covariance contribution | 1.24 |
Combinations/Pair | 1.26 |
Mean z-score | -2.22 |
Structure conservation index | 0.56 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.791066 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13559889 115 + 22407834 UUUUUACUUGGCCCGAUCCCGAGGGAGCAGUGCGGUCGCGCCAGUUGGCAAAAGCUGCAGA--UGCUGCCGCGCGCCCAC--ACACCUUUUUCCGAGCCCCGGAAAACUCCUUCUUUUU ....................(((((((..(((.((.((((((....)))....((.((((.--..)))).))))).)).)--))....(((((((.....))))))))))))))..... ( -42.00) >DroSec_CAF1 21089 114 + 1 UUUUUACUUGGCCCGAGCC-AAGGGAGCAGUGUGGUCG--CCGGUUGGCAAAAGCUGCAGA--UGCUACCACGCGCCCACACACACCUUUUUCCGAGCCCCGGAAAACUCCUUCUUUUU ......((((((....)))-)))((((..((((((.((--(.(((.((((...........--)))))))..))).))))))......(((((((.....)))))))))))........ ( -42.20) >DroSim_CAF1 28653 114 + 1 UUUUUACUUGGCCCGAGCC-CAGGGAGCAGUGUGGUCG--CCGGUUGGCAAAAGCUGCAGA--UGCUACCACGCGCCCACACACACCUUUUUCCGAGCCCCGGAAAACUCCUUCUUUUU ......((.(((....)))-.))((((..((((((.((--(.(((.((((...........--)))))))..))).))))))......(((((((.....)))))))))))........ ( -38.10) >DroEre_CAF1 20458 110 + 1 UUUUUACUUGGCCCUCGCC-AAGGGAGCAGUGUGGUCG--CCGGUUUCCAAAUGCUGCAGA--UGCUGCCGAGUGCCU---CACACCUUUUUCCGAACCACGGAAAACUCCUUCUUU-U ......((((((....)))-)))((((..(((.((.((--(((((........((......--.)).)))).))))).---)))....(((((((.....)))))))))))......-. ( -36.50) >DroYak_CAF1 18853 108 + 1 UUUUUACUUGGCCAACGCC-AAGGGAGC---GUGGUCG--CCAGUUG-CGAAUGCUGCAGACCUCUUUCCGAAUCCCG---AAUCCCGAACUCUGGACCCCGGAAAACUCCUUCUUU-U ......((((((....)))-)))((((.---(.((((.--.((((..-.....))))..)))).)((((((..(((.(---(.........)).)))...)))))).))))......-. ( -33.50) >consensus UUUUUACUUGGCCCGAGCC_AAGGGAGCAGUGUGGUCG__CCGGUUGGCAAAAGCUGCAGA__UGCUACCGCGCGCCCAC_CACACCUUUUUCCGAGCCCCGGAAAACUCCUUCUUUUU ......((((((....))).)))((((..(((((((......((((......))))(((....))).)))))))..............(((((((.....)))))))))))........ (-21.50 = -22.74 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:03 2006