Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,559,244 – 13,559,340 |
Length | 96 |
Max. P | 0.694443 |
Location | 13,559,244 – 13,559,340 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 79.77 |
Mean single sequence MFE | -27.36 |
Consensus MFE | -20.64 |
Energy contribution | -21.84 |
Covariance contribution | 1.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.54 |
Structure conservation index | 0.75 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.694443 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13559244 96 - 22407834 --GCCACAUAUUAUAAAUUGCACCACGGGGAGCCGUGCCGAAGUGCCGGCGUGUGAAUGGUCCAAAUGUGUGGAGCUCUAGGAAA-----------AAAAAUAGGUGCA --.(((((((((((...(..(((.((((....))))((((......)))))))..)...))...))))))))).((((((.....-----------.....)))).)). ( -30.70) >DroSec_CAF1 20437 104 - 1 --GCCACAUAUUAUAAAUUGCACCACGGAGAGCCGUGCCGAAGUGCCGGCGUGUGAAUGGGCCAAAUGUGUGGGGCUCUAAACAAAAAAAA-GU--AAAAAUAGGUGCA --................((((((((((....))))((((......)))).(((....(((((..(....)..)))))...))).......-..--.......)))))) ( -29.20) >DroSim_CAF1 27999 107 - 1 --GCCACAUAUUAUAAAUUGCACCACGGAGAGCCGUGCCGAAGUGCCGGCGUGUGAAUGGGCCAAAUGUGUGGAGCUCUAAACAAAAAAAAAAUAAAAAAAUAGGUGCA --.(((((((((.......(((((((((....))))).....)))).(((.(......).))).))))))))).((((((.....................)))).)). ( -28.00) >DroEre_CAF1 19830 89 - 1 CCGCCACAUAUUAUAAAUUGCACCACGGGGAGGCGUGCCAAAGUGCCGGCGUGUGAAUGGGCCAUAUGUGCGGGCCCCUAAAAAAAAA----U---------------- ((((.((((((........((((((((......)))).....)))).(((.(......).)))))))))))))...............----.---------------- ( -24.00) >DroYak_CAF1 18230 91 - 1 --GCCACAUAUUAUAAAUUGCCCCACGGAGAGCCGUGCCGAAGUGCCGGCGUGUGAAUGGGCCAAAUGUGCGGGCAUCUAAGAAAAAAAAA-UU--------------- --(((.((((((.......((((.((((....))))((((......))))........))))..))))))..)))................-..--------------- ( -24.90) >consensus __GCCACAUAUUAUAAAUUGCACCACGGAGAGCCGUGCCGAAGUGCCGGCGUGUGAAUGGGCCAAAUGUGUGGGGCUCUAAAAAAAAAAAA_UU__AAAAAUAGGUGCA ...(((((((((.......(((((((((....))))).....)))).(((.(......).))).))))))))).................................... (-20.64 = -21.84 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:56 2006