Locus 474

Sequence ID 2L_DroMel_CAF1
Location 1,383,735 – 1,383,837
Length 102
Max. P 0.887143
window760

overview

Window 0

Location 1,383,735 – 1,383,837
Length 102
Sequences 6
Columns 113
Reading direction forward
Mean pairwise identity 75.67
Mean single sequence MFE -28.67
Consensus MFE -12.66
Energy contribution -12.05
Covariance contribution -0.61
Combinations/Pair 1.38
Mean z-score -2.27
Structure conservation index 0.44
SVM decision value 0.94
SVM RNA-class probability 0.887143
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1383735 102 + 22407834
UUGGCUUUUGAUGGCUGAUUGGCAUUUAAUUGCCAUU-GU-UGGCGCCAGCUGGGA------UGGCACAAAA---AAACUGGCAUUUUUAAACAAAUCGGUUUCAAAGGCUAA
.((((((((((.((((((((....(((((.(((((((-.(-((..((((.......------)))).)))..---.)).)))))...)))))..)))))))))))))))))). ( -35.30)
>DroSec_CAF1 2268 101 + 1
UUAGCUUUUGAUGGCUGAUUGGCAUUUAAUUGCCAUU-GC-UGGCGCCAGCUGGGA------UGGCACAAA----AAACGCACAUUUUUAAACAAAUCGGUUUUGAAGGCUAA
.(((((((..(.((((((((((((......))))...-((-((....)))).((((------((((.....----....)).))))))......)))))))))..))))))). ( -32.60)
>DroSim_CAF1 2304 101 + 1
UUAGCUUUUGAUGGCUGAUUGGCAUUUAAUUGCCAUU-GC-UGGCGCCAGCUGGGA------UGGCACAAA----AAACUCGAAUUUUUAAUCAAAUCGGGUUCGAAGGCUAA
.(((((((((((((((....))).......(((((((-.(-..((....))..)))------)))))))..----..((((((.(((......))))))))))))))))))). ( -33.60)
>DroEre_CAF1 2402 106 + 1
UUAGCUUUUGAUGGCUGAUUGGCGUUUAAUUGCCAUU-UU-GCACGCCAGCUGACACACAGAUAGCACAA-----AAAUGCACAUUUUUAAACAAAUCAGGUUUUAAUGCUAA
.((((..((((.(.(((((((((((.(((........-))-).))))).((((.(.....).))))..((-----((((....)))))).....)))))).).)))).)))). ( -24.60)
>DroYak_CAF1 2366 100 + 1
UUAGCUUUUGAUGGCUGAUUGGCAUUUAAUUGCCAUU-UU-GGACGGCAGCUGGCA------UGACAAAA-----AAAUUCACAUUUUUAAACCAGGCAGGUUUUAAUGCUAA
((((((......))))))((((((((...(((((...-((-(....((.....)).------...)))((-----((((....))))))......))))).....)))))))) ( -22.80)
>DroAna_CAF1 2368 98 + 1
UCGGCUUUUGAUGCCUGAUUGGCAUUUAAUUGCCUUUUGUUGGACAGCAGCUGGGA------CGGCGGAAAACAAAUAUAUACUUUUUCCAUUAAGUACAUUUC---------
..(((..((((((((.....)))).))))..)))((((((((..(........)..------))))))))..........(((((........)))))......--------- ( -23.10)
>consensus
UUAGCUUUUGAUGGCUGAUUGGCAUUUAAUUGCCAUU_GU_GGACGCCAGCUGGGA______UGGCACAAA____AAACUCACAUUUUUAAACAAAUCGGGUUCGAAGGCUAA
((((((..((.........(((((......))))).........))..))))))........................................................... (-12.66 = -12.05 +  -0.61) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:01 2006