Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,383,735 – 1,383,837 |
Length | 102 |
Max. P | 0.887143 |
Location | 1,383,735 – 1,383,837 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 75.67 |
Mean single sequence MFE | -28.67 |
Consensus MFE | -12.66 |
Energy contribution | -12.05 |
Covariance contribution | -0.61 |
Combinations/Pair | 1.38 |
Mean z-score | -2.27 |
Structure conservation index | 0.44 |
SVM decision value | 0.94 |
SVM RNA-class probability | 0.887143 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1383735 102 + 22407834 UUGGCUUUUGAUGGCUGAUUGGCAUUUAAUUGCCAUU-GU-UGGCGCCAGCUGGGA------UGGCACAAAA---AAACUGGCAUUUUUAAACAAAUCGGUUUCAAAGGCUAA .((((((((((.((((((((....(((((.(((((((-.(-((..((((.......------)))).)))..---.)).)))))...)))))..)))))))))))))))))). ( -35.30) >DroSec_CAF1 2268 101 + 1 UUAGCUUUUGAUGGCUGAUUGGCAUUUAAUUGCCAUU-GC-UGGCGCCAGCUGGGA------UGGCACAAA----AAACGCACAUUUUUAAACAAAUCGGUUUUGAAGGCUAA .(((((((..(.((((((((((((......))))...-((-((....)))).((((------((((.....----....)).))))))......)))))))))..))))))). ( -32.60) >DroSim_CAF1 2304 101 + 1 UUAGCUUUUGAUGGCUGAUUGGCAUUUAAUUGCCAUU-GC-UGGCGCCAGCUGGGA------UGGCACAAA----AAACUCGAAUUUUUAAUCAAAUCGGGUUCGAAGGCUAA .(((((((((((((((....))).......(((((((-.(-..((....))..)))------)))))))..----..((((((.(((......))))))))))))))))))). ( -33.60) >DroEre_CAF1 2402 106 + 1 UUAGCUUUUGAUGGCUGAUUGGCGUUUAAUUGCCAUU-UU-GCACGCCAGCUGACACACAGAUAGCACAA-----AAAUGCACAUUUUUAAACAAAUCAGGUUUUAAUGCUAA .((((..((((.(.(((((((((((.(((........-))-).))))).((((.(.....).))))..((-----((((....)))))).....)))))).).)))).)))). ( -24.60) >DroYak_CAF1 2366 100 + 1 UUAGCUUUUGAUGGCUGAUUGGCAUUUAAUUGCCAUU-UU-GGACGGCAGCUGGCA------UGACAAAA-----AAAUUCACAUUUUUAAACCAGGCAGGUUUUAAUGCUAA ((((((......))))))((((((((...(((((...-((-(....((.....)).------...)))((-----((((....))))))......))))).....)))))))) ( -22.80) >DroAna_CAF1 2368 98 + 1 UCGGCUUUUGAUGCCUGAUUGGCAUUUAAUUGCCUUUUGUUGGACAGCAGCUGGGA------CGGCGGAAAACAAAUAUAUACUUUUUCCAUUAAGUACAUUUC--------- ..(((..((((((((.....)))).))))..)))((((((((..(........)..------))))))))..........(((((........)))))......--------- ( -23.10) >consensus UUAGCUUUUGAUGGCUGAUUGGCAUUUAAUUGCCAUU_GU_GGACGCCAGCUGGGA______UGGCACAAA____AAACUCACAUUUUUAAACAAAUCGGGUUCGAAGGCUAA ((((((..((.........(((((......))))).........))..))))))........................................................... (-12.66 = -12.05 + -0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:01 2006