Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,558,323 – 13,558,421 |
Length | 98 |
Max. P | 0.862175 |
Location | 13,558,323 – 13,558,421 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 88.49 |
Mean single sequence MFE | -27.60 |
Consensus MFE | -21.61 |
Energy contribution | -22.30 |
Covariance contribution | 0.69 |
Combinations/Pair | 1.21 |
Mean z-score | -2.01 |
Structure conservation index | 0.78 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.862175 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13558323 98 + 22407834 UUGUGCUGCAAGCUUACCCUCUUUUAAUAAAAGAAA-AAAAUACCUGAAUGAGUGGAGUCCCCUUGCCGCUUGUCGGGUUUUGUGUGCUGCUCGCAUAU .(((((.(((.((.(((..(((((.....)))))..-..((.(((((.(..(((((..........)))))..)))))).))))).)))))..))))). ( -27.50) >DroSec_CAF1 19499 99 + 1 UUGUGCUGCAAGUUUACCCCUUUUUAAUAAAAGAAAAAAAAUACCUGAAUGAGUGGAGUCUCCUUUCCGCUUGUCGGGUUUUGUGUGCUGCUCGCAUAU .(((((.(((.((.(((..(((((....)))))......((.(((((.(..(((((((......)))))))..)))))).))))).)))))..))))). ( -29.90) >DroSim_CAF1 27163 98 + 1 UUGUGCUGCAAGUUUACCCCUUUUUAAUAAAAGAAA-AAAAUACCUGAAUGAGUGGAGUCUCCUUUCCGCUUGUCGGGUUUUGUGUGCUGCUCGCAUAU .(((((.(((.((.(((..(((((....)))))...-..((.(((((.(..(((((((......)))))))..)))))).))))).)))))..))))). ( -29.90) >DroYak_CAF1 17439 96 + 1 UUGUACUGCAAGU-UACCCCCUUUUAAUAAAAGAAA-GAAGGACCUGAAUGGG-GGAGAUUCCUUGCCGCUUGUCAGGUUUUGUGUAUUGCUCAAAGAC (((....((((..-(((...(((((.......))))-).(((((((((..(((-.(((....))).)).)...))))))))))))..)))).))).... ( -23.10) >consensus UUGUGCUGCAAGUUUACCCCCUUUUAAUAAAAGAAA_AAAAUACCUGAAUGAGUGGAGUCUCCUUGCCGCUUGUCGGGUUUUGUGUGCUGCUCGCAUAU .(((((.(((.((.(((..(((((....)))))......((.(((((.(..(((((((......)))))))..)))))).))))).)))))..))))). (-21.61 = -22.30 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:55 2006