Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,558,164 – 13,558,283 |
Length | 119 |
Max. P | 0.820180 |
Location | 13,558,164 – 13,558,254 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 90.74 |
Mean single sequence MFE | -21.30 |
Consensus MFE | -17.77 |
Energy contribution | -18.15 |
Covariance contribution | 0.38 |
Combinations/Pair | 1.19 |
Mean z-score | -1.80 |
Structure conservation index | 0.83 |
SVM decision value | 0.68 |
SVM RNA-class probability | 0.820180 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13558164 90 - 22407834 AAAAAUAAGAUGGGAGGGCAAAAUAUUUCCUUCCUGACAGGCCGACAAGCCAACGAGAAUAAUUUUCGUUAAAGGUCGAAUUCUAUACCA .......(((.(((((((.((....)).)))))))(((.(((......)))(((((((.....)))))))....)))....)))...... ( -22.00) >DroSec_CAF1 19340 90 - 1 AAAAGUAAGAUGGGAGGGCAAAAUGUUUCCUUCCUGACAGGCCGACAAGCCAACGGGAACAAUUCUCGUUAAAGGUCAAAUUCUAUAGCA .......(((.((((((((.....))..))))))((((.(((......)))(((((((.....)))))))....))))...)))...... ( -23.90) >DroSim_CAF1 27004 90 - 1 AAAAGUAAGAUGGGAGGGCAAAAUGUUUCCUUCCUGACAGGCCGACAAGCCAACGGGAACAAUUCUCGUUAAAGGUCGAAUUCUAUACCA ....((((((.(((((((.((....)).)))))))(((.(((......)))(((((((.....)))))))....)))....))).))).. ( -24.80) >DroYak_CAF1 17280 90 - 1 AAAAGUUAGACGAAAACGCAAAAUGUUUCCUUCCUGACAGGCCGACAAGCCAACGAGAACAAUACUCGGUAAAGGUCAAAUUGUAUACCA ....(((((..(.(((((.....))))).)...))))).((...(((((((..((((.......)))).....)))....))))...)). ( -14.50) >consensus AAAAGUAAGAUGGGAGGGCAAAAUGUUUCCUUCCUGACAGGCCGACAAGCCAACGAGAACAAUUCUCGUUAAAGGUCAAAUUCUAUACCA ...........(((((((.........)))))))((((.(((......)))(((((((.....)))))))....))))............ (-17.77 = -18.15 + 0.38)
Location | 13,558,175 – 13,558,283 |
---|---|
Length | 108 |
Sequences | 4 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 91.05 |
Mean single sequence MFE | -30.91 |
Consensus MFE | -24.36 |
Energy contribution | -24.80 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.16 |
Mean z-score | -1.69 |
Structure conservation index | 0.79 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.660301 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13558175 108 - 22407834 GCAGAGUGCAGCUUUUCGGCGAAGGGCAGAAAAAUAAGAUGGGAGGGCAAAAUAUUUCCUUCCUGACAGGCCGACAAGCCAACGAGAAUAAUUUUCGUUAAAGGUCGA ((.....)).(((((((...))))))).............(((((((.((....)).)))))))(((.(((......)))(((((((.....)))))))....))).. ( -28.70) >DroSec_CAF1 19351 108 - 1 GCAGAGUGCAGCUUUUCGGCGAAGGGUAGAAAAGUAAGAUGGGAGGGCAAAAUGUUUCCUUCCUGACAGGCCGACAAGCCAACGGGAACAAUUCUCGUUAAAGGUCAA ((.....)).(((((((.((.....)).))))))).....((((((((.....))..))))))((((.(((......)))(((((((.....)))))))....)))). ( -32.10) >DroSim_CAF1 27015 108 - 1 GCAGAGUGCAGCUUUUCGUCGAAGGGCAGAAAAGUAAGAUGGGAGGGCAAAAUGUUUCCUUCCUGACAGGCCGACAAGCCAACGGGAACAAUUCUCGUUAAAGGUCGA ((.....)).((((((((((....))).))))))).....(((((((.((....)).)))))))(((.(((......)))(((((((.....)))))))....))).. ( -35.60) >DroYak_CAF1 17291 108 - 1 GCAGAGUGCAGCUUUUCGGUGAAGGAAAGAAAAGUUAGACGAAAACGCAAAAUGUUUCCUUCCUGACAGGCCGACAAGCCAACGAGAACAAUACUCGGUAAAGGUCAA ((.....)).((((.((((.((((((((.(...(((.......)))......).)))))))))))).)))).(((.......((((.......))))......))).. ( -27.22) >consensus GCAGAGUGCAGCUUUUCGGCGAAGGGCAGAAAAGUAAGAUGGGAGGGCAAAAUGUUUCCUUCCUGACAGGCCGACAAGCCAACGAGAACAAUUCUCGUUAAAGGUCAA ((.....)).(((((((..(....)...))))))).....(((((((.........)))))))((((.(((......)))(((((((.....)))))))....)))). (-24.36 = -24.80 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:54 2006