Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,557,730 – 13,557,849 |
Length | 119 |
Max. P | 0.711994 |
Location | 13,557,730 – 13,557,849 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 83.25 |
Mean single sequence MFE | -24.98 |
Consensus MFE | -10.56 |
Energy contribution | -14.12 |
Covariance contribution | 3.56 |
Combinations/Pair | 1.16 |
Mean z-score | -2.84 |
Structure conservation index | 0.42 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.711994 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13557730 119 + 22407834 AACAAUACCACAUUUUACGGUGAAUAUAAAAUGUUGACAGUCAAAUGAAAAUAAUUGUUGCAAA-AAACAUUUCCGUGUAUAUUUAUUUGUGCACGAAAAUUCAUUUACCUGUCGAACAA .....((((.........)))).........(((((((((..(((((((......((((.....-.))))....((((((((......))))))))....)))))))..))))).)))). ( -29.70) >DroSec_CAF1 18982 118 + 1 AACAAUACCACAUUUUACCGUGGAUAUAUAAUGUUGACAGCCAAAUUAAAAUAAUUGUUACAAA-A-ACAUUUCCGUGUAUAUUUAAUUGUGCAUGAAAAUGUGUUUACCUGUCGAACAA .......((((........))))........(((((((((...(((((...))))).....(((-.-((((((.((((((((......)))))))).)))))).)))..))))).)))). ( -25.80) >DroSim_CAF1 26637 119 + 1 AACAAUACCACAUUUUACGGUGGAUAUAAAAUGUUGACAGCCAAAUGAAAAUAAUUGUUACAAA-ACGCAUUUCCGUGUAUAUUUAUUUGUGCAUGAAAAUGCAUUUACCUGUCGAACAA .......((((........))))........(((((((((..((((..........(((....)-))((((((.((((((((......)))))))).))))))))))..))))).)))). ( -30.30) >DroEre_CAF1 18982 120 + 1 AACAAUAACACAUUUUACGGGUGAUAUAAAACUUUGACAGUCAAGUGAAAAUAAUUGUUACAAAAAAACAUUUCCGCGAAAACGUAUUUGUGCAAGAAAGUGCAUUUACCUGUCGAACAA ............(((.((((((((......(((((((((((...((....)).))))))...........(((.((((((......)))))).))))))))....)))))))).)))... ( -19.30) >DroYak_CAF1 17113 105 + 1 AACAAAACCACAUUUUACGGUGGAUAUAAAACAUUGCCAGCCAAAUGAAAAUAAUUGUUACAAA-AAACGUAUCCGCGAAAAUUUACUUGUGCAUGAAAGUGCAUU-------------- ...................((((((((....((((........)))).........(((.....-.)))))))))))............((((((....)))))).-------------- ( -19.80) >consensus AACAAUACCACAUUUUACGGUGGAUAUAAAAUGUUGACAGCCAAAUGAAAAUAAUUGUUACAAA_AAACAUUUCCGUGUAUAUUUAUUUGUGCAUGAAAAUGCAUUUACCUGUCGAACAA .......((((........))))..........(((((((..(((((.......(((...))).....(((((.((((((((......)))))))).))))))))))..))))))).... (-10.56 = -14.12 + 3.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:53 2006