Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,556,994 – 13,557,104 |
Length | 110 |
Max. P | 0.534062 |
Location | 13,556,994 – 13,557,104 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 78.41 |
Mean single sequence MFE | -19.84 |
Consensus MFE | -12.28 |
Energy contribution | -13.56 |
Covariance contribution | 1.28 |
Combinations/Pair | 1.05 |
Mean z-score | -1.62 |
Structure conservation index | 0.62 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.534062 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13556994 110 - 22407834 AUCACCCAUGGCAACCUACAU--------ACAUAAAUACAAAUGAAUGGUAUAUAAAUCAAAUUUAAGUGAACUGAA-GCAUUGCUGGUAUAUGUACAUCUAACAUUGCCCAUUCAUUU .........(((((....(((--------.(((........))).)))(((((((.(((.......((....))..(-((...)))))).)))))))........)))))......... ( -17.20) >DroSec_CAF1 18270 118 - 1 AUCACCCAUGUCAACCUACAUAUGUACAUACAUAAAUACAAAUGAAUGGUAUAUAAAUCACAUUUAAGUGAACUGAA-GCAUUGCUGGUAUAUGUACAUCUAACAUUGCCCAUUCAUUG ....................(((((....)))))......(((((((((........((((......))))......-(((.((.(((...........))).)).)))))))))))). ( -20.60) >DroSim_CAF1 25932 114 - 1 AUCACCCAUGGCAACCUACAUAUGUACCUACA----UACAAAUGAAUGGUAUAUAAAUCACAUUUAAGUGAACUGAA-GCAUUGCUGGUGUAUGUGCAUCUAACAUUGCCCAUUCAUUG ..((((...(((((.((.((((((((((..((----(....)))...))))))))..((((......))))..)).)-)..))))))))).(((.(((........))).)))...... ( -24.40) >DroEre_CAF1 18094 91 - 1 AUCACCCAUGGCAACCC------------------------AUGUAUGGUACAUAAAUCACAUUUAAAUGAAUUGAAGGCAUUUCUGGUACCCA----UCUAGCAUUGCCCAUUCACUG ((((..(((((....))------------------------)))..))))..................(((((....((((...((((......----.))))...)))).)))))... ( -18.70) >DroYak_CAF1 16409 102 - 1 AUCAACCAUGGCAACCUACAU--------A--------CAUAUUUAUGGCAUAUAAAUCACAUUUAAGUGAACUGAA-GCAUUGCUGGUACCUAUGUAUCUAACAUUGCCCAUUGAUUG (((((....(((((..((.((--------(--------((((....(((((......((((......))))......-....))))).....))))))).))...)))))..))))).. ( -18.29) >consensus AUCACCCAUGGCAACCUACAU________ACA____UACAAAUGAAUGGUAUAUAAAUCACAUUUAAGUGAACUGAA_GCAUUGCUGGUAUAUGUACAUCUAACAUUGCCCAUUCAUUG ........................................(((((((((........((((......)))).......(((.((.(((...........))).)).)))))))))))). (-12.28 = -13.56 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:51 2006