Locus 4733

Sequence ID 2L_DroMel_CAF1
Location 13,553,748 – 13,553,868
Length 120
Max. P 0.778610
window7485

overview

Window 5

Location 13,553,748 – 13,553,868
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 91.25
Mean single sequence MFE -33.70
Consensus MFE -25.98
Energy contribution -26.22
Covariance contribution 0.25
Combinations/Pair 1.14
Mean z-score -2.04
Structure conservation index 0.77
SVM decision value 0.55
SVM RNA-class probability 0.778610
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13553748 120 + 22407834
CCCACAAAACUCGUGGGUUUAUUUGGUGAAUCCGACCCAGAUGAUAGACGCGUUUGUUCUGUAUUUGCCGUCGUAUCUGCCAGAUACAAAUGUAUCUGUCAUUGCAAAGUGUGUUACUAU
(((((.......)))))......((((((..........(((((((((..(((((((((((((..(((....)))..)).)))).)))))))..)))))))))..........)))))). ( -37.35)
>DroSec_CAF1 15065 120 + 1
CCCACAAAACUCGUGGGUUUACUUGGUGAAUCCGACCCAGAUGAUAGACGCGUUUGUUCUGUAUUUGCCGUCGUAUCUGCCAGAUACAAAUGUAUCUCUCAUUGCAAAGUGUGUUACUAU
(((((.......)))))......((((((..........(((((.(((..(((((((((((((..(((....)))..)).)))).)))))))..))).)))))..........)))))). ( -33.25)
>DroEre_CAF1 14861 120 + 1
CUCACAAAACUCGGGGUUUUUUUUGAAAUACCCGACCCAGUUAAUAGACGCGUUUGUUCUGUAUUUGCCGUCGUAUCUGCCAGAUACAAAUGUAUCUCUUAUUGCAAAGUGUGUUACUAU
..((((....((((((((((....))))).)))))..((((.((.(((..(((((((((((((..(((....)))..)).)))).)))))))..))).)))))).....))))....... ( -28.90)
>DroYak_CAF1 13076 120 + 1
CCCACACAACGCGGGGGUUUAUUUGGAAAAUCCGAGCCAGAUGAUAGACGCGUUUGCUCUGUAUUUGCCGUCGUAUCUGCUAGAUACAAAUGUAUCUCCCAUUGCAAAGUGUGUUACUAU
..(((((...(((((((....(((((.....))))).((((((...((((((..(((...)))..)).)))).))))))..((((((....))))))))).))))...)))))....... ( -35.30)
>consensus
CCCACAAAACUCGGGGGUUUAUUUGGAAAAUCCGACCCAGAUGAUAGACGCGUUUGUUCUGUAUUUGCCGUCGUAUCUGCCAGAUACAAAUGUAUCUCUCAUUGCAAAGUGUGUUACUAU
..((((........((((((((...))))))))......(((((.(((..(((((((((((((..(((....)))..))).))).)))))))..))).)))))......))))....... (-25.98 = -26.22 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:48 2006