Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,552,390 – 13,552,501 |
Length | 111 |
Max. P | 0.883950 |
Location | 13,552,390 – 13,552,501 |
---|---|
Length | 111 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.12 |
Mean single sequence MFE | -28.08 |
Consensus MFE | -18.03 |
Energy contribution | -20.07 |
Covariance contribution | 2.03 |
Combinations/Pair | 1.19 |
Mean z-score | -1.97 |
Structure conservation index | 0.64 |
SVM decision value | 0.93 |
SVM RNA-class probability | 0.883950 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13552390 111 + 22407834 GCAA---GUCCAUUGUUGGGGCAAAAAGAGCGAAGAAGGCGAAAAGCAUAAGGUAUAACGUGAGUCAUGAAAACCUGAGUAAA------GCUCAGGGGACUCAUCCAUUUUUAUUGUGAA ....---((((.......)))).......((((.((((((.....))....((......(((((((.......((((((....------.)))))).)))))))))..)))).))))... ( -27.50) >DroPse_CAF1 16649 96 + 1 GCAAAAAACUCUUUGUUAAA--------CUCUCAGA---------ACUC-AAGCGAGAAGUGAGUCAUGGAAAUGUCGGGGAA------ACCGAAUGGAAUCAUCCAUUUUUAUGGUGGA (((((......)))))....--------..((((..---------.(((-....)))...))))((((((((((.((((....------.))))..(((....))))))))))))).... ( -20.20) >DroSec_CAF1 11276 111 + 1 GCAA---AUUCAUUGUUGGGGCAAAAAGAGCGAAGAAGGUGGAAAGCAUAAGGUAAACCGUGAGUCAUGAAAACCUGAGUAAA------GCUCAGGGGACUCAUCCAUUUUUAUUGUGAA ((.(---((.....)))...)).......((((.(((((((((........((....)).((((((.......((((((....------.)))))).))))))))))))))).))))... ( -32.40) >DroSim_CAF1 11525 111 + 1 GCAA---AUCCAUUGUUGGGGCAAAAAGAGCGAAGAAGGUGGAAAGCAUAAGGUAUAACGUGAGUCAUGAAAACCUGAGUAAA------GCUCAGGGGACUCAUCCAUUUUUAUUGUGAA ((..---.((((....)))))).......((((.(((((((((........(......).((((((.......((((((....------.)))))).))))))))))))))).))))... ( -32.20) >DroEre_CAF1 13538 111 + 1 GCAA---AUCCAUUGUUGGGGCAGAAAGAGCGAAGAAGGUGGGAAGCAUAAGGUAUGAAGUGAGUCAUGAAAACCUGAGUAAA------CCUCUGGGGACUCAUCCAUUUUUAUUGUGAA ((..---.((((....)))))).......((((.((((((((....((((...))))..(((((((.......((.(((....------.))).)).))))))))))))))).))))... ( -26.50) >DroYak_CAF1 11686 117 + 1 GCAA---AUCCAUUGUUGGGGCAAAAAGAGCGAAGAAGGUGGAAAGCAUAAGGUAUAACGUGAGUCAUGAAAACCUGAGUAAACCUAAACCUCUGGGGACUCAUCCAUUUUUAUUGUGAA ((..---.((((....)))))).......((((.(((((((((.......((((((.((....)).))....))))((((...((((......)))).)))).))))))))).))))... ( -29.70) >consensus GCAA___AUCCAUUGUUGGGGCAAAAAGAGCGAAGAAGGUGGAAAGCAUAAGGUAUAACGUGAGUCAUGAAAACCUGAGUAAA______GCUCAGGGGACUCAUCCAUUUUUAUUGUGAA ........((((....)))).........((((.(((((((((..((.....))......((((((.......((((((...........)))))).))))))))))))))).))))... (-18.03 = -20.07 + 2.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:46 2006