Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,552,106 – 13,552,219 |
Length | 113 |
Max. P | 0.954089 |
Location | 13,552,106 – 13,552,219 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.73 |
Mean single sequence MFE | -20.70 |
Consensus MFE | -16.24 |
Energy contribution | -16.80 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.10 |
Mean z-score | -2.32 |
Structure conservation index | 0.78 |
SVM decision value | 1.44 |
SVM RNA-class probability | 0.954089 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13552106 113 - 22407834 --CAAACACUCUGGGUCACAAGAAAAUCAUUCUGUCAAUUCGCUUGGAGUGACAAUAGCGAAAUUAAAUUAAUUAUGCAAAGCAACCCCAUUUGUUUAAUAACAAAAUAC-----ACCCA --....(((((..(((....((((.....))))........)))..)))))......(((.(((((...))))).)))............((((((....))))))....-----..... ( -19.40) >DroSec_CAF1 10994 120 - 1 AGCAAACACUCUGGGUCACAAGAAAAACAUUCUGUCAAUUCGCUUGGAGUGACAAUAGCGAAAUUAAAUUAAUUAUGCUAAGCAACCCCAUUUGUUUAAUAACAAAAUACAAAAUACCCA .((...(((((..(((....((((.....))))........)))..)))))....(((((.(((((...))))).))))).)).......((((((....)))))).............. ( -24.10) >DroSim_CAF1 11244 115 - 1 AGCAAACACUCUGGGUCACAAGAAAAACAUUUUGUCAAUUCGCUUGGAGUGACAAUAGCGAAAUUAAAUUAAUUAUGCUAAGCAACCCCAUUUGUUUAAUAACAAAAUAC-----ACCCA .((...(((((..(((.((((((......))))))......)))..)))))....(((((.(((((...))))).))))).)).......((((((....))))))....-----..... ( -24.90) >DroEre_CAF1 13249 114 - 1 AGCAAACACUCUGGGUCACAAGAAAAACAUUCUGUUAACUCAUUUGAAGUGACAAUAGCGAAAUUAAAUUAAUUAUGCCAAGCAAC-CCAUUUGUUUAAUAACAAAAUAC-----ACCCA ...........(((((..(.............(((((..((....))..)))))...(((.(((((...))))).)))...)..))-)))((((((....))))))....-----..... ( -16.10) >DroYak_CAF1 11360 114 - 1 AGCAAACACUCUGGGUCACAAGAAAAACAUUCUGUUAAUUCAUUUGAAGUGACAAUAGCGAAAUGAAAUUAAUUAUGCUAGGCAAC-CCAUUUGUUUAAUAACAAAAUAC-----ACCCA ...........(((((..(.............(((((.(((....))).))))).(((((.(((.......))).))))).)..))-)))((((((....))))))....-----..... ( -19.00) >consensus AGCAAACACUCUGGGUCACAAGAAAAACAUUCUGUCAAUUCGCUUGGAGUGACAAUAGCGAAAUUAAAUUAAUUAUGCUAAGCAACCCCAUUUGUUUAAUAACAAAAUAC_____ACCCA .((...((((((..((....((((.....))))........))..))))))....(((((.(((((...))))).))))).)).......((((((....)))))).............. (-16.24 = -16.80 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:45 2006