Locus 4729

Sequence ID 2L_DroMel_CAF1
Location 13,551,911 – 13,552,029
Length 118
Max. P 0.867271
window7481

overview

Window 1

Location 13,551,911 – 13,552,029
Length 118
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 89.71
Mean single sequence MFE -22.02
Consensus MFE -17.96
Energy contribution -17.72
Covariance contribution -0.24
Combinations/Pair 1.15
Mean z-score -1.73
Structure conservation index 0.82
SVM decision value 0.85
SVM RNA-class probability 0.867271
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13551911 118 - 22407834
UUCCACCCUCAAAACGAUACCCUUCCC--CUUCCCCCUAAUAUCCUUCACUCGUCAAUUAUCCUGGCAAAGUACGUAAUUAUUUUUGUUGCUCGAAGGGUUCUGGGUGAAAAUGUUAACU
...(((((..........(((((((..--.......................((((.......)))).......(((((.......)))))..)))))))...)))))............ ( -22.82)
>DroSec_CAF1 10795 120 - 1
CUCCACCCUCAAAACAAUACCCUCUUUUUCCCCCCUCUAAUAUCCUUCACUCGUCAAUUAUCCUGGCAAAGUACGUAAUUAUUUUUGUUGCUCGAAGGGUUCUGGGUGAAAAUGUUAACU
.........................(((((.(((.......(((((((....((((.......)))).......(((((.......)))))..)))))))...))).)))))........ ( -20.90)
>DroSim_CAF1 11046 120 - 1
CUCCACCCUCAAAACAAUACCCUCUUUUUCCCCCCUCUAAUAUCCUUCACUCGUCAAUUAUCCUGGCAAAGUACGUAAUUAUUUUUGUUGCUCGAAGGGUUCUGGGUGAAAAUGUUAACU
.........................(((((.(((.......(((((((....((((.......)))).......(((((.......)))))..)))))))...))).)))))........ ( -20.90)
>DroEre_CAF1 13061 110 - 1
CUCCACCCUCAAAACAAAACACUC----------CCCCAAAAUCCUUCACUCCUCAAUUAUCCUGGCAAAGUACGUAAUUAUUUUUGUUGCUCGAAGGGUUCUGGGUGAAAAUGUUAACU
.................((((.((----------.((((.(((((((((((((...........))...)))..(((((.......)))))..)))))))).)))).))...)))).... ( -22.40)
>DroYak_CAF1 11172 110 - 1
CUCCACCCUCAAAACAAUACCCUC----------CCCCGGUAUCCUUCACUCGUCAAUUAUCCUGGCAAAGUACGUAAUUAUUUUUGUAGCUCGAAGGGUUCUGGGUGAAAAUGUUAACU
......................((----------.(((((.(((((((....((((.......))))....((((.((....)).))))....))))))).))))).))........... ( -23.10)
>consensus
CUCCACCCUCAAAACAAUACCCUC_____C__CCCCCUAAUAUCCUUCACUCGUCAAUUAUCCUGGCAAAGUACGUAAUUAUUUUUGUUGCUCGAAGGGUUCUGGGUGAAAAUGUUAACU
...................................((((..(((((((....((((.......)))).......(((((.......)))))..)))))))..)))).............. (-17.96 = -17.72 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:44 2006