Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,548,781 – 13,548,877 |
Length | 96 |
Max. P | 0.982894 |
Location | 13,548,781 – 13,548,877 |
---|---|
Length | 96 |
Sequences | 4 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 89.95 |
Mean single sequence MFE | -33.30 |
Consensus MFE | -27.88 |
Energy contribution | -28.00 |
Covariance contribution | 0.13 |
Combinations/Pair | 1.07 |
Mean z-score | -2.78 |
Structure conservation index | 0.84 |
SVM decision value | 1.93 |
SVM RNA-class probability | 0.982894 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13548781 96 + 22407834 AUCGAAUGAAAAGAAGAAGAAAACAAGUUCUGGGCGCACAGUGGGGCAAGCUUAGAACU---GUAGUGACCACUGUGCGGCAGCAGUUGAGCUUCUAGU------- ..............(((((....(((.(.((.(.((((((((((..((.((........---))..)).)))))))))).))).).)))..)))))...------- ( -30.30) >DroSec_CAF1 7641 103 + 1 AUCGAAAGAAGAGAAGAAGAAAACAAGUUCUGGGCGCACAGUGGGGCAAGCUUAGAACU---GUAGUGACCACUGUGCGGCAGCAGUUGAGCUUCUAGUUUCGCAU .((....)).(((((((((....(((.(.((.(.((((((((((..((.((........---))..)).)))))))))).))).).)))..)))))..)))).... ( -34.80) >DroSim_CAF1 7868 103 + 1 AUCGAAAGAAGAGAAGAAGAAAACAAGUUCUGGGCGCACAGUGGGGCAAGCUUAGAACU---GUAGUGACCACUGUGCGGCAGCAGUUGAGCUUCUAGUUUCGCAU .((....)).(((((((((....(((.(.((.(.((((((((((..((.((........---))..)).)))))))))).))).).)))..)))))..)))).... ( -34.80) >DroEre_CAF1 9982 106 + 1 GUCAAAAGAAGAGAUGGAGAAAACAAGUUCUGGGCGCACAGUGGUGCAAGCUUAGAAGUCUAGUGGUGACCACUGUGCGGCAGCAGUUAAGCUUCUAGAUUCGCAU .......(((....((((..............(.(((((((((((.((.(((.((....)))))..))))))))))))).)(((......)))))))..))).... ( -33.30) >consensus AUCGAAAGAAGAGAAGAAGAAAACAAGUUCUGGGCGCACAGUGGGGCAAGCUUAGAACU___GUAGUGACCACUGUGCGGCAGCAGUUGAGCUUCUAGUUUCGCAU .((....)).....(((((....(((.(.((.(.((((((((((.....(((............)))..)))))))))).))).).)))..))))).......... (-27.88 = -28.00 + 0.13)
Location | 13,548,781 – 13,548,877 |
---|---|
Length | 96 |
Sequences | 4 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 89.95 |
Mean single sequence MFE | -26.80 |
Consensus MFE | -22.17 |
Energy contribution | -21.98 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.05 |
Mean z-score | -2.54 |
Structure conservation index | 0.83 |
SVM decision value | 1.63 |
SVM RNA-class probability | 0.968891 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13548781 96 - 22407834 -------ACUAGAAGCUCAACUGCUGCCGCACAGUGGUCACUAC---AGUUCUAAGCUUGCCCCACUGUGCGCCCAGAACUUGUUUUCUUCUUCUUUUCAUUCGAU -------...(((((..(((...(((.((((((((((.((....---(((.....)))))..))))))))))..)))...)))....))))).............. ( -24.90) >DroSec_CAF1 7641 103 - 1 AUGCGAAACUAGAAGCUCAACUGCUGCCGCACAGUGGUCACUAC---AGUUCUAAGCUUGCCCCACUGUGCGCCCAGAACUUGUUUUCUUCUUCUCUUCUUUCGAU ...(((((..(((((..(((...(((.((((((((((.((....---(((.....)))))..))))))))))..)))...)))....))))).......))))).. ( -27.40) >DroSim_CAF1 7868 103 - 1 AUGCGAAACUAGAAGCUCAACUGCUGCCGCACAGUGGUCACUAC---AGUUCUAAGCUUGCCCCACUGUGCGCCCAGAACUUGUUUUCUUCUUCUCUUCUUUCGAU ...(((((..(((((..(((...(((.((((((((((.((....---(((.....)))))..))))))))))..)))...)))....))))).......))))).. ( -27.40) >DroEre_CAF1 9982 106 - 1 AUGCGAAUCUAGAAGCUUAACUGCUGCCGCACAGUGGUCACCACUAGACUUCUAAGCUUGCACCACUGUGCGCCCAGAACUUGUUUUCUCCAUCUCUUCUUUUGAC ...((((...((((((......)))..(((((((((((((....(((....)))....)).)))))))))))......................)))...)))).. ( -27.50) >consensus AUGCGAAACUAGAAGCUCAACUGCUGCCGCACAGUGGUCACUAC___AGUUCUAAGCUUGCCCCACUGUGCGCCCAGAACUUGUUUUCUUCUUCUCUUCUUUCGAU ..........(((((..(((...(((.((((((((((.........................))))))))))..)))...))).)))))................. (-22.17 = -21.98 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:42 2006