Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,546,119 – 13,546,216 |
Length | 97 |
Max. P | 0.996380 |
Location | 13,546,119 – 13,546,216 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 91.51 |
Mean single sequence MFE | -25.34 |
Consensus MFE | -21.93 |
Energy contribution | -22.77 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.11 |
Mean z-score | -2.23 |
Structure conservation index | 0.87 |
SVM decision value | 2.69 |
SVM RNA-class probability | 0.996380 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13546119 97 + 22407834 CGACUCCAAGUGGUUAUAAAAAUUCGCGCUUGGCGUUUCUUAUAUUGCCAAAACUAAAAA-AAAAGGCGAAGGAGGAAUGUUAGACUUGGAGAUGCU--C ...((((((((((..........))....((((((((((((...(((((...........-....)))))..)))))))))))))))))))).....--. ( -26.76) >DroSec_CAF1 4945 96 + 1 CGACUCCAAGCGGUUAUAAAAAUUCGCGCUUGGCGUUUCUUAUAUUGCCAAAACUAAAA--AAAAGGCGAAGGAGAAAUGUUAGACUUGGAGAUGCU--C ...((((((((((..........))))(..(((((((((((...(((((..........--....)))))..)))))))))))..))))))).....--. ( -28.94) >DroSim_CAF1 4985 98 + 1 CGACUCCAAGCGGUUAUAAAAAUUCGCGCUUGGCGUUUCUUAUAUUGCCAAAACUAAAAAAAAAAGGCGAAGGAGAAAUGUUAGACUUGGAGAUGCU--C ...((((((((((..........))))(..(((((((((((...(((((................)))))..)))))))))))..))))))).....--. ( -28.79) >DroEre_CAF1 7276 94 + 1 CGACUCCAAGCGGUUAUAAAAAUUCGCGCUUGGAGUUUCUUAUUUCGCCAAU-CCA-AA--AAAAAGCGAAGGAGAAAUGUUAGACUUUGAGAUGCU--C .(((((((((((..............)))))))))))((((.((((((....-...-..--.....)))))))))).....................--. ( -23.48) >DroYak_CAF1 5204 97 + 1 CGAAUCCAAGCGGUUAUAAAAAUUCGCGCUUGGCGUUUCUUAUUUCGCCAAA-CUACAA--AAAAAACGAAGGAGAAAUGUUAGACUUUGAGAUGCUCUC ...((((((((((..........))))(..(((((((((((.(((((.....-......--......))))))))))))))))..).))).)))...... ( -18.73) >consensus CGACUCCAAGCGGUUAUAAAAAUUCGCGCUUGGCGUUUCUUAUAUUGCCAAAACUAAAA__AAAAGGCGAAGGAGAAAUGUUAGACUUGGAGAUGCU__C ...((((((((((..........))))(..(((((((((((...(((((................)))))..)))))))))))..)))))))........ (-21.93 = -22.77 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:36 2006