Locus 4723

Sequence ID 2L_DroMel_CAF1
Location 13,545,695 – 13,545,788
Length 93
Max. P 0.543132
window7472

overview

Window 2

Location 13,545,695 – 13,545,788
Length 93
Sequences 5
Columns 117
Reading direction forward
Mean pairwise identity 87.93
Mean single sequence MFE -33.76
Consensus MFE -21.74
Energy contribution -21.94
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -2.32
Structure conservation index 0.64
SVM decision value 0.02
SVM RNA-class probability 0.543132
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13545695 93 + 22407834
ACAAGUUUAGAUACGUGUAGUGUAUGUUUUGUCUGUCGG-----UCGAGUAGUCUGGGCCUCGAUGGCU----------------AUAUGGCUAUAUGACCGUAUGGCUGGGCU---
...(((((((((((.....)))).........(((((((-----(((.((((((..((((.....))))----------------....)))))).)))))).)))))))))))--- ( -31.40)
>DroSec_CAF1 4521 93 + 1
ACAAGUUUAGAUACGUGUAGUGUAUGUUUUGUCUGUCGG-----UCGAGUAGUCUGGGCCUCGAUGGCU----------------AUAUGGCUAUAUGACCGUAUGGCUGGGCU---
...(((((((((((.....)))).........(((((((-----(((.((((((..((((.....))))----------------....)))))).)))))).)))))))))))--- ( -31.40)
>DroSim_CAF1 4555 93 + 1
ACAAGUUUAGAUACGUGUAGUGUAUGUUUUGUCUGUCGG-----UCGAGUAGUCUGGGCCUCGAUGGCU----------------AUAUGGCUAUAUGACCGUAUGGCUGGGCU---
...(((((((((((.....)))).........(((((((-----(((.((((((..((((.....))))----------------....)))))).)))))).)))))))))))--- ( -31.40)
>DroEre_CAF1 6814 99 + 1
ACAAGUUUAGAUACGUGUAGUGUAUGUUUUGUCUGUCGG-----UCGAGUAGUCUGGGCCUCUAUGGCU----------AUGGCUCUAUGGCAAUAUGACCGUAUGGCUGGGCU---
...(((((((((((.....)))).........(((((((-----(((.((.(((.(((((.........----------..)))))...))).)).)))))).)))))))))))--- ( -28.00)
>DroYak_CAF1 4757 117 + 1
ACAAGUUUAGAUACGUGUAGUGUAUGUUUUGUCUGUCGGCCGAGUCGAGUCGUCUGGGCCUCUAUGGCUAGAUGGCUAUAUGGCUAUAUGGCUAUAUGACCGUAUGGCUGGGCUGGC
(((((.....((((.....))))....)))))..(((((((.(((((((((((((((.((.....))))))))))))((((((((....)))))))).......))))).))))))) ( -46.60)
>consensus
ACAAGUUUAGAUACGUGUAGUGUAUGUUUUGUCUGUCGG_____UCGAGUAGUCUGGGCCUCGAUGGCU________________AUAUGGCUAUAUGACCGUAUGGCUGGGCU___
(((((.....((((.....))))....)))))...((((.....))))...((((.((((.....))))....................((((((((....)))))))))))).... (-21.74 = -21.94 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:35 2006