Locus 4722

Sequence ID 2L_DroMel_CAF1
Location 13,544,246 – 13,544,349
Length 103
Max. P 0.750110
window7471

overview

Window 1

Location 13,544,246 – 13,544,349
Length 103
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.82
Mean single sequence MFE -34.60
Consensus MFE -17.65
Energy contribution -18.90
Covariance contribution 1.25
Combinations/Pair 1.17
Mean z-score -2.32
Structure conservation index 0.51
SVM decision value 0.47
SVM RNA-class probability 0.750110
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 13544246 103 - 22407834
UAUUGAAAAGACAUC-------CCCCCGGUCAUUGCCUGCCCCCCU-CCACCCUGCUGGG------CUUCGUUUU-GGCCGGGCCGGGCCUG--GCUGGCAUUGCCUAUAUUAACAAUAA
(((((.........(-------((((((((((..((..((((..(.-.......)..)))------)...))..)-)))))))..)))...(--((.......)))........))))). ( -34.70)
>DroPse_CAF1 4065 110 - 1
UAUUCAAAAGACGACCGUCCGACCCCCGGUCAGGGCCUGCC---------GCCUGCUGGCAAGAGCCCUGGCUUUCGGGGG-GGAGGGAGGGGUGGGGGCAUUGCCUAUAUUAACAAUAA
..............((..((..(((((((((((((((((((---------(.....)))).)).)))))))))....))))-)..))..))((((.((((...)))).))))........ ( -48.30)
>DroSec_CAF1 3072 96 - 1
UAUUGAAAAGACAUC-------CCCCCGGUCAAUGCCUGCCCC---CCCGGCCUGCUGGU------CUUCGUUUU-GGCCG-----GGCCUG--GCUGGCAUUGCCUAUAUUAACAAUAA
(((((....(....)-------.....((.(((((((.(((..---(((((((.((....------....))...-)))))-----))...)--)).)))))))))........))))). ( -36.80)
>DroSim_CAF1 3112 99 - 1
UAUUGAAAAGACAUC-------CCCCCGGUCAAUGCCUGUCCCCCUCCCGGCCUGCUGGU------CUUCGUUUU-GGCCG-----GGCCUG--GCUGGCAUUGCCUAUAUUAACAAUAA
(((((....(....)-------.....((.(((((((.(((.....(((((((.((....------....))...-)))))-----))...)--)).)))))))))........))))). ( -33.10)
>DroEre_CAF1 5383 95 - 1
UAUUGAAAAGACAUC-------CC-CCGGUCAUUGCCUGCCCC---UCCAGCCUGCUGGG------UUUCCUUUU-GGCCG-----GGUCUG--GCUGGCAUUGCCUAUAUUAACAAUAA
(((((....(.....-------..-.)((.((.((((.(((..---(((.(((....((.------...))....-))).)-----))...)--)).)))).))))........))))). ( -27.00)
>DroYak_CAF1 3232 95 - 1
UAUUGAAAAGACAUC-------CC-CCGGUCAUUGCCUGCCUC---UCCAGCCUGCUGGG------UUUCCUUUU-GGCCG-----GGCCUG--GCUGGCAUUGCCUAUAUUAACAAUAA
(((((....(.....-------..-.)((.((.((((.(((..---(((.(((....((.------...))....-))).)-----))...)--)).)))).))))........))))). ( -27.70)
>consensus
UAUUGAAAAGACAUC_______CCCCCGGUCAUUGCCUGCCCC____CCAGCCUGCUGGG______CUUCGUUUU_GGCCG_____GGCCUG__GCUGGCAUUGCCUAUAUUAACAAUAA
...........................((.((.((((.((.......((((....)))).................((((......))))....)).)))).)))).............. (-17.65 = -18.90 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:34 2006