Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,537,534 – 13,537,642 |
Length | 108 |
Max. P | 0.738194 |
Location | 13,537,534 – 13,537,642 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 89.71 |
Mean single sequence MFE | -13.12 |
Consensus MFE | -11.06 |
Energy contribution | -10.66 |
Covariance contribution | -0.40 |
Combinations/Pair | 1.15 |
Mean z-score | -1.47 |
Structure conservation index | 0.84 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.738194 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13537534 108 + 22407834 GCCGUCUAUUGAUUUUCCUAUCAAUAUUUCCAUUCCAUUUUACUCUCCCUUAUCCUGUCUUUUGCACGGUGUUCUCACGGGCAUAUUGCAUUUCGAUCAAAUAAAU--AU ......(((((((......))))))).......................((((...(((...((((..((((((....))))))..))))....)))...))))..--.. ( -14.90) >DroSec_CAF1 23594 108 + 1 GCCGUCUAUUGAUUUUCCUAUCAAUAUUUCCAUUCCAUUUUACUCUCCCUUAUCCUGUCUUCUACACGGUGUUCUCACGGGCAUAUUGCAUUUCUAUUAAAUAAAU--AU .((((.(((((((......)))))))........................((((.(((.....))).)))).....))))((.....)).................--.. ( -12.30) >DroSim_CAF1 20121 108 + 1 GCCGUCUAUUGAUUUUCCUAUCAAUAUUUCCAUUCCAUUUUACUCUCCCUUAUCCUGUCUUCUACACGGUGUUCUCACGGGCAUAUUGCAUUUCUAUUAAAUAAAU--AU .((((.(((((((......)))))))........................((((.(((.....))).)))).....))))((.....)).................--.. ( -12.30) >DroEre_CAF1 26962 108 + 1 GCUUUCUAUUGAUUUUCCUAUCAAUAUUUCCAUUCUAUUUUACUCUCCCUUAUCCUCGUUUCUACACGGUGUUUUCGCGGGCAUAUUGUAUUUCUAUUAAAUAUAU--AU ......(((((((......)))))))....................(((.......(((......)))(((....)))))).....(((((((.....))))))).--.. ( -12.00) >DroYak_CAF1 24293 110 + 1 GCUUCCUAUUGAUUUCUCUAUCAAUAUUUCCAUUCUAUUUUACCCGCCCUUGUCCUCUUUUCUACACGGUGUUCUCACGGGCAUAUUGCCUUUCUAUUAAAUGUAUUAAC ((....(((((((......)))))))...................((((.(((..........)))..(((....))))))).....))..................... ( -14.10) >consensus GCCGUCUAUUGAUUUUCCUAUCAAUAUUUCCAUUCCAUUUUACUCUCCCUUAUCCUGUCUUCUACACGGUGUUCUCACGGGCAUAUUGCAUUUCUAUUAAAUAAAU__AU (((...(((((((......)))))))..........................................(((....))).)))............................ (-11.06 = -10.66 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:32 2006