Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,375,989 – 1,376,097 |
Length | 108 |
Max. P | 0.751363 |
Location | 1,375,989 – 1,376,097 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 77.15 |
Mean single sequence MFE | -30.16 |
Consensus MFE | -16.89 |
Energy contribution | -18.99 |
Covariance contribution | 2.10 |
Combinations/Pair | 1.21 |
Mean z-score | -1.79 |
Structure conservation index | 0.56 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.751363 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1375989 108 + 22407834 AUUGCCAGACAUUUGUCUUUC--UCUUGGCCCG----UCGUCCGGGUAUCCUGCUCAAGGCAAAUUCAUCUCUGCCACUUUUGUGCUUCGUCUUCACCUUGAACGGCGAUG------CUC .(((((((((....))))...--.....(((((----.....)))))...........))))).....................((.((((((((.....))).))))).)------).. ( -28.00) >DroSec_CAF1 7645 110 + 1 AUUGCCAGACAUUUGUCUUCCUCUCCUGGUCCG----UCGUCCGGGUAUCCUGCUCGAGGCAAAUUCAUCUCUGGCACUUUUGUGCUUCGUCUUCACCUUGAGCGGCGCUG------CUC ...(((((((....))))......(((((.(..----..).)))))......((((((((.............(((((....))))).........)))))))))))....------... ( -33.55) >DroSim_CAF1 7651 110 + 1 AUUGCCAGACAUUUGUCUUCCUCUCCUGGUCCG----UCGUCCGGGUAUCCUGCUCGAGGCAAAUUCAUCUCUGGCACUUUUGUGCUUCGUCUUCACCUUGAGCGGCGCUG------CUC ...(((((((....))))......(((((.(..----..).)))))......((((((((.............(((((....))))).........)))))))))))....------... ( -33.55) >DroEre_CAF1 7379 113 + 1 AUUGCCAGACAUUUGUCUUCCUC--UUGGCCCG----UCGUUCGGGUAUCCUGCUCAGGGCGAAUUCAUCUCUGGCACUUUUAUGC-UCGUCUUCACCUUGAACGGCGAUGCUGAUGCUG ..(((((((.(((((((((....--...(((((----.....))))).........))))))))).....))))))).......((-((((((((.....))).))))).))........ ( -34.19) >DroYak_CAF1 7540 112 + 1 AUUGCCAGACAUUUGUCUUCCUC--UUGGCCCGGGUCUCCUUCGGGUAUCCAGCUCAAGCCAAAUUCAUCUCUGGCACUUUUGCGCUUCGUCUUCACCUUGAACGGCGUUG------CUC ..(((((((....((.......(--(((((..((((..((....)).)))).)).)))).......))..))))))).......((..(((((((.....))).))))..)------).. ( -33.24) >DroAna_CAF1 8468 86 + 1 AUUGCCAGACAUUUGUCUUUCUC--UCGUCUC------AGUCGGGAUAUGUUGGUAG---------UAUCUCUGGCAUUUUUAUACCUCG----------GAGC-UCCCCG------CUU ..(((((((.((((..(....((--(((....------...)))))......)..))---------.)).))))))).............----------((((-.....)------))) ( -18.40) >consensus AUUGCCAGACAUUUGUCUUCCUC__UUGGCCCG____UCGUCCGGGUAUCCUGCUCAAGGCAAAUUCAUCUCUGGCACUUUUGUGCUUCGUCUUCACCUUGAACGGCGCUG______CUC ..(((((((.(((((((((.........(((((.........))))).........))))))))).....)))))))...........(((((((.....))).))))............ (-16.89 = -18.99 + 2.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:59 2006