Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 13,535,445 – 13,535,565 |
Length | 120 |
Max. P | 0.523034 |
Location | 13,535,445 – 13,535,565 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 83.83 |
Mean single sequence MFE | -50.50 |
Consensus MFE | -33.86 |
Energy contribution | -33.25 |
Covariance contribution | -0.61 |
Combinations/Pair | 1.31 |
Mean z-score | -2.05 |
Structure conservation index | 0.67 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.523034 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 13535445 120 + 22407834 CUGCUUGCCCGACUCCUCCAUUGCGGUUCGCAGCUGGGAGAGACUGAUCUGCAGCCGGGCCAUGCGCAUGUCGCCGGCUUUUAGCCGCACCUCCUGGUUGGACGUAAAGCCGGUGGCAUC ..((..(((((.(((..((((((((...))))).)))..))).(((.....))).)))))...))..((((((((((((((...(((.(((....))))))....)))))))))))))). ( -56.70) >DroPse_CAF1 28725 120 + 1 CUGCUUGUUCGUCUCCUCCAUUUCGGUGCGCAGAUUGGCCAGACUGAUCUGGAUCUUGGCCAUGCGCAUGUUGCCGGCCUUUAGCUUCACUUCCUGGCUGGCCGUGAAGUCGGUGACUUC ..........(((.((...(((((((((((((...((((((((((.....)).)).)))))))))))))...(((((((...((.....))....)))))))..)))))).)).)))... ( -43.90) >DroSec_CAF1 21469 120 + 1 CUGUUUGCCCGACUCCUCCAUUGCGGUGCGCAGCUGGGAGAGACUGAUCUUCAGCCGGGCCAUGCGCAUGUCGCCGGCUUUUAGCCGCACCUCCUGGUUGGACGUAAAGCCGGUGGCAUC ..((..(((((.(((..((((((((...))))).)))..))).(((.....))).)))))...))..((((((((((((((...(((.(((....))))))....)))))))))))))). ( -55.90) >DroYak_CAF1 22172 120 + 1 CUGUUUGCUCGACUCCUCCAUUGCGGUGCGCAGCUGGGAGAGACUGAUCUGCAGCCGGGCCAUGCGCAUGUCGCCGGCUUUUAGCCGCACCUCCUGGUUGGCCGAAAAGCCGGUGGCAUU ..((..(((((.(((..((((((((...))))).)))..))).(((.....))).)))))...))..(((((((((((((((.((((.(((....)))))))..))))))))))))))). ( -55.60) >DroAna_CAF1 23606 120 + 1 CGUCUUGCUGGAGGCCUCCAUUUCGGUGCGUAGCUGGGAGAGACUUAUCUGGAUCCGGGCCAUUCGCAUGUCGCCGGCCUUCAGUGUCACCUCCUGUUUGGUCGUAAGGCCGGCGGCAUU .....(((.((((((((((((..((((.....))))..)((......))))))....)))).))))))(((((((((((((.......((..((.....))..))))))))))))))).. ( -47.01) >DroPer_CAF1 28621 120 + 1 CUGCUUGUUCGUCUCCUCCAUUUCGGUGCGCAGAUUGGCCAGACUGAUCUGGAUCUUGGCCAUGCGCAUGUUGCCGGCCUUUAGCUUCACUUCCUGGCUGGCCGUGAAGUCGGUGACUUC ..........(((.((...(((((((((((((...((((((((((.....)).)).)))))))))))))...(((((((...((.....))....)))))))..)))))).)).)))... ( -43.90) >consensus CUGCUUGCUCGACUCCUCCAUUGCGGUGCGCAGCUGGGAGAGACUGAUCUGCAGCCGGGCCAUGCGCAUGUCGCCGGCCUUUAGCCGCACCUCCUGGUUGGCCGUAAAGCCGGUGGCAUC .........................((((((((((.((..(((....)))....)).)))..)))))))(((((((((((((((((.........))))).....))))))))))))... (-33.86 = -33.25 + -0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:31 2006